Scaffold Ga0151514_10792

Overview

Basic Information

• Taxon OID: 3300011115
• Scaffold ID: Ga0151514_10792
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016May
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 13127
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (76.19%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009265	Metagenome / Metatranscriptome	320	Y
F009526	Metagenome / Metatranscriptome	316	N
F009679	Metagenome / Metatranscriptome	314	Y
F009746	Metagenome / Metatranscriptome	313	N
F036209	Metagenome / Metatranscriptome	170	Y
F048270	Metagenome	148	Y
F090105	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151514_1079210	F036209	GAG	MVMADKVTVKMTPDSRDLKSLYKAFRQMDDGAKKALKDDVTSISQWSATELQSSYTLNPLPAQAQKVAATIRANKDRIPNVTIGGSKGRFSGGAVSGQVLFGSEFGGPAPFENGGRRFPDRSPAQGRGNEGYGIFKVLKQIQPELTRRWKDAVTRRVIEKWDDSNG*
Ga0151514_1079215	F090105	N/A	MTFLTWFAHSPIASFVKVFGAGVLGWLLVNADTLSIHPALTIGLVSALPILINWLNPEYTNYGRANLDEAD*
Ga0151514_1079218	F048270	N/A	MTQLINAGQLAAALIAILTLLGMLVKWGIVKPIKAYIDTMTYSIQPYANGGKSLPDLINKVDALHLVVQNHIDTRHDTPNFSKCLCESCLTC*
Ga0151514_107926	F009679	AGGA	MALITLSELKAVLGIGDIYADSIVQAVADSAENIILSYLIFDDVSIVGASLTNNVARFYCHDNTFVIGQALTVTGCGSPFNGSRTVTKVGYDEYNVTYFEAAITNANITKRSIIPNGRAVLTSQAALYDTTPEVREAALAVACDIWITRTGTLGQQGVDFQSPAPYRLGRSMLTRVSGLLGKHLDTRGYLG*
Ga0151514_107927	F009746	GAGG	LADLATFRSNLAATLAAAGRVVYSYPNENITPPAIVLVPGSPYITVSAIGGARCNVRFDITVIVNATDNQAALKNLETLILSVTDLLANNISFLGGWSQPTVTQIGNADMLISQINIEMVTTN*
Ga0151514_107928	F009526	GAG	MPATYITGRNLTLSINSVSYADQASTVTLEMENNQQVLEVLSGRAYKTVDKTATLNVELYLDDTSSAGIISALWDAASSAPDTSLTFSFDVNGDTFAGKVFPVFPTVGGAATDVLSTSLSFVVEDGSVTRT*
Ga0151514_107929	F009265	AGG	MQYTVTTKQGNNYIVSDENAWLWIEIERELGYTVSQAAEKMSQGSLDVITCMLYKAAKAQGKTQLPSQRVWVENEFETFEVIEENPKENSLTDSSE*