Scaffold Ga0151514_10771

Overview

Basic Information

• Taxon OID: 3300011115
• Scaffold ID: Ga0151514_10771
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016May
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 13335
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (45.45%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000722	Metagenome / Metatranscriptome	922	Y
F027510	Metagenome	194	N
F044491	Metagenome	154	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151514_1077119	F044491	AGGCGG	MSTYTTASKQLISNYACISTLEPTDIALGENITVTGLASPFNGTFKVLDLPQYEFTGVDSTTGEFQFDVNVPRANQIIYAATGSNVEYVITYAGTVTYTQLCTWITVADLVTYLGVTITNPSDDYTLATQATNAANVFCYRRRQESGYHDGLSTSPGTDATLGTLMYAAALWRSRGSIETAYAAFDTMGTPTQQSLTPIVKQLLGIPRPAVA*
Ga0151514_107714	F000722	N/A	MTDAQYPETGITEETRRMYPDNYSDKLGKVFGEMIDDIVRPHHVARPEPPDHTILLDELTMMYDAHMTIGGEQNRFNASVIKAAINVIRAL*
Ga0151514_107718	F027510	N/A	MTVNNLPKFIILLVGLLCLTALMVADKIDMASGVPMLTMIIGYSIGNGVNAKQGGESSNVFGKRNK*