Scaffold Ga0151514_10761

Overview

Basic Information

• Taxon OID: 3300011115
• Scaffold ID: Ga0151514_10761
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016May
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 13459
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002009	Metagenome / Metatranscriptome	604	Y
F002149	Metagenome / Metatranscriptome	589	Y
F007467	Metagenome / Metatranscriptome	350	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151514_1076117	F002149	GAGG	MTAVEYIEKSNVPEAMWPNLADWFGWFEKQGMVGIVEDKDGIAGVALARCVKDGQKPDHYVHSEDGENVFVDLTISSKGAKSLRCLLLLLWERFGPRKRITFNRSGKPRSYDYMTFMRKARV*
Ga0151514_107615	F002009	GGAG	MTAPSIAEMGDAAGEIIWRVMGKGSDKSAYGDWLVKDRPTHDYHIARAIRHLATAQMQLHKSTPCPDNNGETSVDHLERALVRTLFVLAQIKKEVPRL*
Ga0151514_107619	F007467	N/A	VNEKEAWAKFEAGLKDTESFDEAVAWVKKNKKIVEKLTMMAMIRRFNEDISHANKTWRN*