Scaffold Ga0151514_10674

Overview

Basic Information

• Taxon OID: 3300011115
• Scaffold ID: Ga0151514_10674
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016May
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 14390
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (26.32%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003579	Metagenome / Metatranscriptome	478	Y
F004740	Metagenome	425	Y
F009125	Metagenome	322	Y
F013396	Metagenome	271	N
F019100	Metagenome / Metatranscriptome	231	Y
F063471	Metagenome / Metatranscriptome	129	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151514_1067411	F003579	N/A	MTIIPIAPYTMGSPAQPKVGTQFEVRYINYTSPTAVADCHLLDDEGVEIMPIGLVPATAEQCAEWTSDEAFAGVFAVNAGFELVSAE*
Ga0151514_1067414	F004740	N/A	MLDNPFLGLDTATLSALKTKTIDAIQAVLLNQSYTVNGKSVSRADLDALNNMLGNLQDALTNAAGDSTDITFISSTGN*
Ga0151514_1067418	F019100	N/A	MTEPEQTPSEILARRNVANIATKLKAGKTLTTSERKALNDFQTGQLDGWAKDTSALARELGLSRQAIYDARNRFPDAPKKHEDGKRENLAAWQQFCAENVIGKDVATKNLAELKAELMREQIRLARSKNERESGDVIDREVVETMLVTLGQKLALLLRLKLEVELGPRGVGMNAAELNVEGGVILQEIREVINANIATFEGEALDRSREGEKIV*
Ga0151514_106743	F063471	N/A	MYTNSAAIFRGDIAGVVEQAKDYEAGLIGTQVMPILDVPVRAGQYPSFVLKEGQLLKSDVKNRAAYSAYARGTRAFNQDTFLALEYGYEESVDDTVTLDVARFFDAETMAAKLAKRKLLLAHELRVAAKIFDNTTFTATNSGTAYTTGNLASFDAAQDVQEAIDRLLAKGESVTNLKVVIPYPVWTRVRASTKFQNRLRGAGISSDTILNASTQAAAEVFGVAEVLIGRASYDTAPEGVAFSAGNVWANTFMWVGSVTQASAGYFGGGAAFTLSWSEYGPAIGVSTYREEAIKSNIVRASHFVAEKVVNANAGQLITTQFA*
Ga0151514_106746	F009125	AGGAG	MNADHTRAVLTAATPAAAMISLSQINEVAGLVGTLLGIAFLLWRWRREAKRKD*
Ga0151514_106749	F013396	N/A	VTLSRSILVAVLALGLVVVLGLALRSERVLTAGLPLRIVAKTQEEARTLAGLGAVGVLGTGSMAPYIAAAPAGSDPLATVMAYVVTVQGATIADVRAGSLCIYIPEWAGRHVMHQAASFSEGGWIMTGLGTKSYETTERMTGRNFVGIVARTYIWP*