NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0151514_10674

Scaffold Ga0151514_10674


Overview

Basic Information
Taxon OID3300011115 Open in IMG/M
Scaffold IDGa0151514_10674 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016May
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)14390
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (26.32%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameGangwon-do, South Korea
CoordinatesLat. (o)37.947421Long. (o)127.818872Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003579Metagenome / Metatranscriptome478Y
F004740Metagenome425Y
F009125Metagenome322Y
F013396Metagenome271N
F019100Metagenome / Metatranscriptome231Y
F063471Metagenome / Metatranscriptome129N

Sequences

Protein IDFamilyRBSSequence
Ga0151514_1067411F003579N/AMTIIPIAPYTMGSPAQPKVGTQFEVRYINYTSPTAVADCHLLDDEGVEIMPIGLVPATAEQCAEWTSDEAFAGVFAVNAGFELVSAE*
Ga0151514_1067414F004740N/AMLDNPFLGLDTATLSALKTKTIDAIQAVLLNQSYTVNGKSVSRADLDALNNMLGNLQDALTNAAGDSTDITFISSTGN*
Ga0151514_1067418F019100N/AMTEPEQTPSEILARRNVANIATKLKAGKTLTTSERKALNDFQTGQLDGWAKDTSALARELGLSRQAIYDARNRFPDAPKKHEDGKRENLAAWQQFCAENVIGKDVATKNLAELKAELMREQIRLARSKNERESGDVIDREVVETMLVTLGQKLALLLRLKLEVELGPRGVGMNAAELNVEGGVILQEIREVINANIATFEGEALDRSREGEKIV*
Ga0151514_106743F063471N/AMYTNSAAIFRGDIAGVVEQAKDYEAGLIGTQVMPILDVPVRAGQYPSFVLKEGQLLKSDVKNRAAYSAYARGTRAFNQDTFLALEYGYEESVDDTVTLDVARFFDAETMAAKLAKRKLLLAHELRVAAKIFDNTTFTATNSGTAYTTGNLASFDAAQDVQEAIDRLLAKGESVTNLKVVIPYPVWTRVRASTKFQNRLRGAGISSDTILNASTQAAAEVFGVAEVLIGRASYDTAPEGVAFSAGNVWANTFMWVGSVTQASAGYFGGGAAFTLSWSEYGPAIGVSTYREEAIKSNIVRASHFVAEKVVNANAGQLITTQFA*
Ga0151514_106746F009125AGGAGMNADHTRAVLTAATPAAAMISLSQINEVAGLVGTLLGIAFLLWRWRREAKRKD*
Ga0151514_106749F013396N/AVTLSRSILVAVLALGLVVVLGLALRSERVLTAGLPLRIVAKTQEEARTLAGLGAVGVLGTGSMAPYIAAAPAGSDPLATVMAYVVTVQGATIADVRAGSLCIYIPEWAGRHVMHQAASFSEGGWIMTGLGTKSYETTERMTGRNFVGIVARTYIWP*

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