Scaffold Ga0151514_10669

Overview

Basic Information

• Taxon OID: 3300011115
• Scaffold ID: Ga0151514_10669
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016May
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 14462
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (54.55%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (44.44%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005702	Metagenome	392	Y
F005846	Metagenome	388	Y
F012113	Metagenome / Metatranscriptome	283	Y
F035669	Metagenome	171	Y
F049401	Metagenome	146	N
F055438	Metagenome	138	N
F060551	Metagenome	132	N
F063298	Metagenome	129	N
F086801	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151514_106691	F063298	AGGA	MSNDKQTGIELKKTITLLEKAKEETVEHMGECISLAADAGDIIASARKEEADLDTILAIAGINGEQARRLERVAKARPTLSAPAPGQLKQLALWAGILPDPIENSTPRPERAWHHYIVLAKQWIAKKVVDQWSPEQRSEFIDEARPIAQAYKDAGGEL*
Ga0151514_1066918	F005702	GAGG	MVIIFLVTFFSLLILQGVRLLAKHIDQQNYERRNFYLWVAAELDKMDKIVAEGNRPKEESIPSNNWAGRN*
Ga0151514_1066919	F005846	N/A	MNNTQMISPKPARPVPSSVPASHIEFAEGTAIEGKLNGWRGLFNQKTGIGYNRHGKIASNHNLMVERLANAGIKAPYIDCEIMGMRTKTGKGTIVVMDAFDPANPKPYSERMKEIEHLEAVTFDVASNKLLRFVRLAHEKINSIWEEMNFQNNKAGEVIWEGFVMKALDDRKYPFITNPNYCSPSWQKQRIRW*
Ga0151514_1066925	F086801	N/A	MTGLKVVASNEFTEKHAYHLSQIQLATIEAIEIKYRKGQAQHGEAGPLWTMPTIRVTENAIEESIDQVTYLMTLRGQVKIILELARLGMEDEDLCATTARDSCKRIFDMMGGIK*
Ga0151514_1066927	F049401	GAGG	LRELLGLFSGGLKIVLRQGLKGMMQRLNIAVGLGTLTLILGGGLALSSCASTNYTYTAPSPADIPALIMEWDKLERTIGQVKPEFREQYAKALKALSNAIAEQERWRARAENK*
Ga0151514_1066928	F012113	N/A	MQQILTFIQSQDVFAWVGALVALLSAVIAVASLIPGDQPEKFLQSVVDVLSKFSKK*
Ga0151514_106693	F060551	GGCGG	MKAEGQDPADSIRASYTPDMAETIDTLEDQMRERLSQMSAMNPALGLDQLAKMLTQIVEETVSSQTDNPTLKNKRDDTLDEAILATMSNRSPESLTSLAARFMNPSTGKPYTRAALSARISKFTKRTGLTLRIQRTERVREIYKERAKRIHERRRKECPKWNKDAFAKGIKKGGKKR*
Ga0151514_1066931	F035669	N/A	MRENQLNELAGASRLGLSFFNRLIRRIECTKPVAGTGINITQEDSGFKISSSGIVGTDGFSEITLNVCSNGTPATIIVLGK*
Ga0151514_106695	F055438	N/A	MNQPFISSATKANAIIAMRYTKGEHESLMATTKRQDKIELLRDAVKTLITNGIPTRTIAETLNKSQGAIQYHARYLSENGEIKKPKRTSQWRDAIK*