Scaffold Ga0151514_10585

Overview

Basic Information

• Taxon OID: 3300011115
• Scaffold ID: Ga0151514_10585
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016May
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 15599
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (83.87%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006740	Metagenome	365	Y
F018510	Metagenome / Metatranscriptome	234	Y
F027746	Metagenome	193	Y
F057944	Metagenome	135	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151514_1058525	F057944	AGGAG	MNDDLLPTGRMFPRTMQEAWPKDYVNEDIFTGPYRDPQLSDFAILCALIAIVGFGFYMFNKYVWVVV*
Ga0151514_1058526	F006740	GGAG	MPIFESWSHENLAKFAQESYIKLQEQQDYIQQLQNDLKDAINAYRSLLK*
Ga0151514_105856	F027746	AGG	MTYGIYPNSSPEFRMTLKSDGTMVMQVRYINTPMGYTGKWMDVKMEKEHDTNNQSIASSNV*
Ga0151514_105857	F018510	N/A	MCHSGSCVIRKEGIEKVIDKYTQPINLKAAEWHEIEALEDGTVFVNVFAEGKY*