Scaffold Ga0151514_10577

Overview

Basic Information

• Taxon OID: 3300011115
• Scaffold ID: Ga0151514_10577
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016May
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 15717
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (72.41%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019099	Metagenome	231	Y
F028428	Metagenome / Metatranscriptome	191	N
F031789	Metagenome	181	N
F085340	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151514_1057717	F028428	GAGG	MSYDKKEYQVIPGRTTLFYKDPSQKKNPKQPDWAGDLVLTRSYTEGETLKLSIWKKTASNGKDYFSVAENTYYKDKDMADNADREVPVQYKQQGGSFKPKPAFDPEDDNSIPF*
Ga0151514_1057724	F031789	GAGG	MSIIGSFYPMGRTFVLSGTTTNQSANIYADSPSGQYLFVNHELASTGQPVYVRISATSGNNAAVANATSGNYGVPIRPAESIVLSGPQCSSGSNVFITYITAAGTANVYVTPGEGR*
Ga0151514_105776	F019099	GAGG	MIINGKFVKDWDKSQISTGYTPPNKFRIITWDMGRIQSWLLGQKPLSRSILEKVIR*
Ga0151514_105779	F085340	AGGAG	MNDFELMQYWRAVTHPQREVEQRVLSFGHAVYQQAYKEAREELRHSFYSGMAKGHEDCKPALQQALSALDSAYYMLKLQPVTPEQEADTIAIAIQSVTATLEKLG*