NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0151514_10508

Scaffold Ga0151514_10508


Overview

Basic Information
Taxon OID3300011115 Open in IMG/M
Scaffold IDGa0151514_10508 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016May
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)16819
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (80.95%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameGangwon-do, South Korea
CoordinatesLat. (o)37.947421Long. (o)127.818872Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014621Metagenome261N
F024254Metagenome206Y
F024264Metagenome / Metatranscriptome206Y
F051880Metagenome / Metatranscriptome143Y
F075679Metagenome118Y
F089863Metagenome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0151514_105081F075679AGAAGMQMIYLTHYRTASTQDVELFDDIIYPQKVNWFPDTYNRTKLGLVYVPHKLAEKVLDPELLTYLRENPVGKTAFILAGGNAHFAGIGQREYKSRLTYTYKFLPFTLTQVYAGRIAQSFGEMDMV
Ga0151514_1050812F051880AGGMAMENTISLSTNLVNGILQYLGNQPYAQVANLIQGIQQEAQSQLPPAEAEEPKAE*
Ga0151514_1050819F024264GGAGMSTLTNVFSAHADATGTIYAGATNLAGYQALSGGTAGEIVFRDGGSGGTVLMRINIPANTNNPFANIIPGNGIRFTSSIHVTLPASAAVTIFCG*
Ga0151514_105082F024254GAGGMNFIEIFNYVAKVARPAHATATIAKAMEDEFSDIGLDSLDGLVMLMYFDEIYGIADEVSKEWSPKSVQELHDLVMANKTKEPTSMEEVAEICK*
Ga0151514_105083F089863GGAMVEAYAAQQLSSNTPEEEWKQWAAGLKAIDIFVNEGIPAPYIYENWQDWASALVGAVNQPTEETAT*
Ga0151514_105089F014621GAGMTLIHWLMSILVIELIAVFVVAFLAFSGFFTDMRLLSKIGIFVMTTGLMVQVMRSLHYFEFGAYPVDTLFPLWITKDIGASIIIFDLALLHFRKGKEC*
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