Scaffold Ga0151514

Basic Information
Taxon OID	3300011115 Open in IMG/M
Scaffold ID	Ga0151514_10468 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016May
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011115 Open in IMG/M

Scaffold ID

Ga0151514_10468 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016May

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	17540
Total Scaffold Genes	38 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	31 (81.58%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (57.14%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

17540

Total Scaffold Genes

38 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

31 (81.58%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (57.14%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.947421	Long. (^o)	127.818872	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.947421

Long. (^o)

127.818872

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002764	Metagenome	531	Y
F009140	Metagenome / Metatranscriptome	322	Y
F011742	Metagenome	287	N
F012211	Metagenome / Metatranscriptome	282	N
F034503	Metagenome	174	Y
F040522	Metagenome	161	N
F040534	Metagenome / Metatranscriptome	161	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151514_104681	F040522	N/A	KGCELYKEVKGTVAAAQKTVKEVTAIAEEVGGFFGFFKKKKPKPTATPVAAKAKKAEAEIWDEGRVVADLAANLSQFFRVQQQLADHIREEEEKSKTVYDPSQNIMESALNRELAKTQFEKLAKEIREIMVYQSPPELGNLYTRVNQMRVIIIAEQEEARLAQEKKQREVEWQRRKVISAIQDKAIYGVACLVVVLYLVLFFSLLVMDRKVRWGF*
Ga0151514_1046811	F002764	AGGAG	MKEPEDEAFEELAKRQGDWGLQGSRKHQIMRYVENNARNEVIEEVAQNIEKCTLAFGKDTIQSFIAYVRGMKK*
Ga0151514_1046812	F011742	N/A	MDRKKGINMTTIEFIPFEWVDDDFNPEIDRIEVDYQWHEADDSVGLLSYCEKTVKWMRFNLEIKDITDELSYADLAYLKHEIQRNDQEIADERT*
Ga0151514_1046819	F012211	AGGAG	MPTDEERFKYECWTVVQELDPDDIADAIQDSVALVEAIKANHAEDVASIVMTRVELKVRRRAELRVFDVVKTAWVDDIEELHHYRNLRIERVQKALEERKIMEAKMDGPFQQMFDE*
Ga0151514_1046820	F009140	AGG	MLEMTHSHTDNNSVSFHYQRYLPELERFGYVINHDQKWHLTEYGRMEMNRAISGAAMRIENGSVKEIYDGKELRMNVFRRGCYDFLQLPSRFGDIFVPRKTPT*
Ga0151514_1046821	F040534	AGGAG	MNTDKSGEGRILSLSTLGEPMSEEEFEDKMNTYELEDRYAEYIESHHPVGNNHVLIRLMERGDYYEDFKEYIMSGSK*
Ga0151514_1046824	F034503	N/A	MNKDQAHEILDQRKQGFAVSQYLVNRALVVSGDISMACPPCQATWVEGPSMAQGQGIRELFYPFVDRNNPGLNQPNEGTQ*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0151514_10468

Overview

Ecosystem & Geography

Associated Families

Sequences