Scaffold Ga0151514

Basic Information
Taxon OID	3300011115 Open in IMG/M
Scaffold ID	Ga0151514_10447 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016May
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011115 Open in IMG/M

Scaffold ID

Ga0151514_10447 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016May

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	18184
Total Scaffold Genes	40 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	34 (85.00%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (100.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

18184

Total Scaffold Genes

40 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

34 (85.00%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.947421	Long. (^o)	127.818872	Alt. (m)	Depth (m)	0
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.947421

Long. (^o)

127.818872

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007519	Metagenome / Metatranscriptome	349	Y
F034467	Metagenome	174	Y
F053072	Metagenome	141	Y
F075680	Metagenome	118	Y
F080867	Metagenome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151514_1044715	F007519	AGGA	MTTGIENLKPEQQRKGRGLGKKPALSCTSLRLPKNVMDYFNTNFAYTKQAKMREVLTEYVNNQTGNKS*
Ga0151514_1044718	F034467	AGGAG	MKEEIKYSSRAIPLRGCNDPKFKWVSAASTDIRRTFRKARLLIRITNGAAYESRT*
Ga0151514_1044719	F080867	AGGAG	MNTLSLSNVVVGEDLQKSLDKEGLKLSGVYEMLDPVVSRLASLNPLWTFVINNSGMHMGNNRTACGFSVKLDGEELGTIGLSYMGQRGKVIAICNDRIGRGRQRSDSYRTQDADKAILMAKKMFGKMNPNERISKAKDAAERVVTRASWNKERERTQHQSLIKNEMLAWAETKGLAMFMEFVKKETIPSLRHKVTVSMEKVELLDTEMKTIEKVQKDFSDNKTALVVKDSGKYLVKIGDKVDLYDDNTLPVDMRMKMGMLKLVEDEQYLTDVGCKVSSEIFVLLVDELTNVSKGV*
Ga0151514_1044722	F053072	AGGAGG	MVVVDIGYRKLVMSKEKAMMLVECLESADVYEEKWWSDDVRKEKGMDSTYTYHVYPNEAHFGMRIVSDTHYQMARLAGKPQEK*
Ga0151514_1044724	F075680	AGGAG	MGYRSDVMAVFYTQDAIEFPSIKLFIDEHIPEFFRTDEYMRTFEGNHDLRGIKFTMNGLKWYPSYPDVSGFERAIEKFEKLSDGGDKWLWEFVRLGEEVEDVEERSCSEAHNLIYVVRSIESDV*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0151514_10447

Overview

Ecosystem & Geography

Associated Families

Sequences