Scaffold Ga0151514_10285

Overview

Basic Information

• Taxon OID: 3300011115
• Scaffold ID: Ga0151514_10285
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016May
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 24187
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (29.41%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022372	Metagenome / Metatranscriptome	214	Y
F078391	Metagenome	116	N
F095140	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151514_1028521	F022372	N/A	MPTTTITIDVAFLTEEQRDAATLLFARSGGWQPLVDGEPNPITAEAFGVTMIANYLRQRVGDQSSYDAQIAAAQAVTDLLEGVTVTTPAEFNALFPTPPITTPV*
Ga0151514_1028522	F078391	N/A	MNDLLASMGRFFANEWDGFYQRVTVNVSVTTVGILTPLVHAELNMWLQTTMYVSGLIVLVWNFWGAQKELRRKRMRDEESAAEWMRVAKAESKFPKRKPSDPHEL*
Ga0151514_1028523	F095140	N/A	MNTKNLAGYGSIIMSLLTALAAAPYTLGEVATIIPSEWKQRVFVVGAIATLILRVIRDNVQSTPPTTPKIEG*