Scaffold Ga0151514_10272

Overview

Basic Information

• Taxon OID: 3300011115
• Scaffold ID: Ga0151514_10272
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016May
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 24855
• Total Scaffold Genes: 44
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 35 (79.55%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003539	Metagenome / Metatranscriptome	480	Y
F003658	Metagenome	474	Y
F014237	Metagenome	264	Y
F031484	Metagenome / Metatranscriptome	182	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151514_1027223	F014237	AGGA	MDTFKNVMMRIFAVIAAEALGVIGAGSLVGIEVWQAAVLAGALGAARVLEALARFFLNDGHLSADEINAAFAKVDKKASE*
Ga0151514_1027225	F031484	AGGAG	MDTKKLVAIATTYARAAVPSVVALYAAGITDPKTLAYAFLSAFIAPLWKALDPKAKEFGIGSKK*
Ga0151514_1027230	F003658	AGAAG	MQSKVDLRGEPTFACICGCMMFKITVMWDEDTRAVGWYDLAQECIECGTITTAPTEIDGCE*
Ga0151514_1027231	F003539	GAG	VNYLEEYNEMVQQLSAEYHKRYGMLERDDIRQELWLWFVAHPRKSQEWAKLEQKDRDKLIAKSLRNAALKYCEKEKAKKSGYDSSDLYYYDATVVEAFLPSIIAGTYSIPVSIQDLNAKFGTGNDAEGNNWLALRSDISHAFEKLSEAKQNVLRLRFSIDSPDWALLAKDMDSTPDGARMKVQRAISSLIKNLGGWRPYHEDDIVKKEEHAV*