Scaffold Ga0151514_10249

Overview

Basic Information

• Taxon OID: 3300011115
• Scaffold ID: Ga0151514_10249
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016May
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 26317
• Total Scaffold Genes: 45
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 39 (86.67%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026266	Metagenome	198	Y
F042293	Metagenome / Metatranscriptome	158	N
F045754	Metagenome / Metatranscriptome	152	N
F054861	Metagenome	139	Y
F056420	Metagenome	137	Y
F058807	Metagenome	134	Y
F073554	Metagenome / Metatranscriptome	120	N
F086803	Metagenome / Metatranscriptome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151514_1024918	F045754	N/A	MTIDPNKPWPFPSNIIQGDNDAKLIADCLALLQDFTAFQLRGEIYYGYLDVRALKVIEELRGATDEAEPSTQA*
Ga0151514_1024919	F073554	AGGA	MSIEMMNDDDFDMDLVQYECWYWSVIDSMAELVMNNGRDKVMSHVSEAVLHKVHSGYVVAKENDEHPLLW*
Ga0151514_102492	F042293	GGAG	VNNITFEELKEALKRLDEVSLLELLGIQSDDLVDRFDDVIEKKQEYLIKELD*
Ga0151514_1024923	F026266	GAGG	MTIETITFHFVGELEDSGAIVDVQCQIDEDGDCRSLDSVMYKGIDVLEVISHFQWSELEWEASKKYKLENHEQLTIAHDHEHALEAIYGLSKPSLNIR*
Ga0151514_1024925	F054861	AGG	MNTKLLKHTRELFKSYDVPEHVRRSYRLKWVRSIRHLGDNWLLANHVTRKKEPTQ*
Ga0151514_1024932	F056420	GAGG	MTLFKLEEHLIMLLVEDNLLYSEGDWEQLSKVRMAIDDTRTQIENFKKATQS*
Ga0151514_1024942	F086803	GGAG	MYYSFYSTSERFINMKFKCNQSGNTVEFFQEHEIAEMKKHSGYTEVPEVREVVEVVEAPKVTKKTVKQDETSIDG*
Ga0151514_102495	F058807	AGGAGG	MNVNLIKEHENGDATYQFDLTADEAQSLLTFGILEAIKAGIREGDRLTVEGEDINEDSSHPGLSD*