Scaffold Ga0151514_10241

Overview

Basic Information

• Taxon OID: 3300011115
• Scaffold ID: Ga0151514_10241
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016May
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 27021
• Total Scaffold Genes: 50
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 42 (84.00%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Associated Families: 11

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001143	Metagenome / Metatranscriptome	766	Y
F005320	Metagenome / Metatranscriptome	405	Y
F026266	Metagenome	198	Y
F042293	Metagenome / Metatranscriptome	158	N
F045754	Metagenome / Metatranscriptome	152	N
F049625	Metagenome	146	Y
F054861	Metagenome	139	Y
F058807	Metagenome	134	Y
F073554	Metagenome / Metatranscriptome	120	N
F074881	Metagenome / Metatranscriptome	119	Y
F086803	Metagenome / Metatranscriptome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151514_1024127	F054861	AGGA	MNTKILKHTRELFKSYDVPEHVRRSYRLKWVRSIRHLGDNWLLANHVKRKDATQ*
Ga0151514_1024128	F026266	AGGA	MTIETITFHFIGELEDSGAIVDVQCQIDEDGDCRSLDSAMYQGINVLEVISHSQWENLQWEGSKKYKAEHYEQLTIDHDNNSTLETVYGLSKPSFNIR*
Ga0151514_1024129	F049625	AGGGGG	MLSDIDLKDWIEQPSVPLYDVPRETPIKTPMGMLWFKHIDGMYSLNYDANGHPVHMKAWVKVNPYMRRKDNE*
Ga0151514_1024133	F073554	AGGA	MSIEMYGIDDDVDMDLVQYECWYWSVIDSMAELVMNNGRDKVMSHVSEAVLTKVHNGYVIAKENEDPLAW*
Ga0151514_1024134	F045754	N/A	MNTDIDPDKPWPFPSNIIQGDNDAKLIADCLALLQDFTAFQLRGEIYYGYLDTKALKVIEELREANNNEAEPST*
Ga0151514_1024136	F001143	GGAGG	MSAWLIAIVGVVYAVVAVDLIVKGNTGLGIAFVGYALGNVGLYMEAAK*
Ga0151514_1024140	F074881	GAGG	MVFDVEANEAAFIVRVIGQLPTESGAFPLHQKLVAQFQEQEKQQSATEPVVTDVTAK*
Ga0151514_1024141	F005320	GGAGG	MSIDTLKPVKVAGEIFWSNWMNTFNTKFNEDNKKYECTIGNLSDAACEKLKELGINIKNKESMGNFIVAKSTYLFTPVDEEGNPVDIAKMGNGTKCHAVISSYRHKMSAKFGAAPSIKKLIVTELKIYSPEGSAEEEETADDVL*
Ga0151514_1024146	F058807	AGGAGG	MNVNLIKEHENGDATYRFDLTPEEAQALLSFGILEAIKAGLREGERLTIRGEDINEDSSNPGLSD*
Ga0151514_1024149	F042293	GAG	VLNITFEELKEALKRLDEVTLLELLGLQSDDLVERFDDVIEKKQEYLIKELD*
Ga0151514_102419	F086803	AGG	MAKFKCIQSGNTVEFFQDHEIAEMKKHTGYTEVIEVVEVPKTTKKTVKQDETSIDG*