Scaffold Ga0151514_10228

Overview

Basic Information

• Taxon OID: 3300011115
• Scaffold ID: Ga0151514_10228
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016May
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 27912
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (37.21%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (18.18%)
• Associated Families: 11

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001272	Metagenome / Metatranscriptome	733	Y
F002621	Metagenome / Metatranscriptome	542	Y
F010688	Metagenome / Metatranscriptome	300	Y
F014610	Metagenome / Metatranscriptome	261	N
F015720	Metagenome / Metatranscriptome	252	Y
F020137	Metagenome / Metatranscriptome	225	N
F037195	Metagenome	168	N
F048263	Metagenome / Metatranscriptome	148	N
F059910	Metagenome / Metatranscriptome	133	N
F061810	Metagenome / Metatranscriptome	131	N
F093769	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151514_1022810	F037195	N/A	MNIFNSTTPQQHDPKELLKQAENLLNKTERKQGWPYYDIKHAVQFAQMVVKLSKIPSKKATINTLTLRQQPQTVRARLSQGKAFIVDKGIGVLRGQIHEDDMPLVSELSEKVQISVRKVNLIIELVEPIDNILDAMVPLMGGTDEDPFVFNEDVFRDQIVEFINSGEIGSQASWQNYTTSAEKYARQLAMQDNTIIIETTPTELIIMKMSEEMLKGLE*
Ga0151514_102282	F059910	N/A	MKKGTEVKLGFIPANVYKVLVHRTETRQSAKGFKMVVCECEIVAPETAIAAGTTYKTLGAKGNMYIMLENKNGVDSALELLATPLQVTGLYDRLPEDYNDVDVAEALSSLQGHAFNMLVQSQPEYVSDDPSNSRDLKFAKRDENGEAIIKRYNTQFDFSQVKGVASPLSDQF*
Ga0151514_1022824	F048263	N/A	MAFENFLQNAANFATAGLYNSLSGRDKELERQKMAEAEAFRANPELVREAAKYDPSIMERLGNLLTGGIYGQASGMNEKLEQRDMAKQQLIQDELQRRMEERMKQYGSAPVPEPVGSELNPDRSAMPMPVEPGTLRKRNTFAGGY*
Ga0151514_1022827	F020137	N/A	MSVHPTNIEAAKLLREHWPTCSTWNDDQILNWIGIFSSKKLFGIVKNDEGKCVGVGAVRFLNSIEESEDLNNNFPDGHIAWIEIAIGTEPYAVQTLWMAMMRLCSKNVTKLGGFRKGISRLYDFDRYFKLLMNKRISYGRII*
Ga0151514_1022831	F002621	N/A	MVKHLMISRMIWLAVLPICLGCQMTRVVLVPSGDPVMLAKPTKASVYGFDKDKKLVGPSTVTLPAGWYVLPKN*
Ga0151514_1022832	F015720	N/A	MKNTKTTLAGVGAILIAVGGALRAVFDGDPTTNLDIAATIAAVTAGIGLIWAKDAKEAEVTKP*
Ga0151514_1022834	F001272	N/A	MIKIELTTEQANSLLQLIDIAVKAGGIQNAKVAVPLADIIIAAAQNKPE*
Ga0151514_1022837	F061810	GGA	LASSGSGGNVTPVDPPIMRRDLLQEDEFFVLQEDGTGKIVLSFGTYDRMATEQGTDLILTEASDKFILTVY*
Ga0151514_1022839	F014610	GGAG	MPIYTFENKGKSVEQIAPMGTDSLVIKGERWTRQPVARFGVTGCAREAELKDKVKQGFSRMEDRQGTRFESTFSKNQIRKIWDI*
Ga0151514_1022840	F010688	N/A	MRPKTATIMVIAVGPKGHHREIGGAPSHSACGCDEADNNAPMIAIPVEALSTDTEDGQQASPEVGDEIVLQEVRGVLKKLENGEAYVEIKSVNGMPAEYEDKGMEKEGPMDEKGMRNMVAEYDSEMES*
Ga0151514_102286	F093769	N/A	MSNQSLNELDLLLGFPKPVEEMTDKELEKFLLRHFPHTRPTGTDLASLLNDPLLKGIDVQAIINQTQNFKFKK*