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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300011115 Open in IMG/M |
| Scaffold ID | Ga0151514_10227 Open in IMG/M |
| Source Dataset Name | Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016May |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Chunlab, Inc |
| Sequencing Status | Finished |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 27933 |
| Total Scaffold Genes | 46 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 36 (78.26%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Gangwon-do, South Korea | |||||||
| Coordinates | Lat. (o) | 37.947421 | Long. (o) | 127.818872 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F010821 | Metagenome | 298 | Y |
| F012435 | Metagenome / Metatranscriptome | 280 | Y |
| F017968 | Metagenome | 237 | Y |
| F029755 | Metagenome | 187 | Y |
| F033290 | Metagenome | 177 | Y |
| F065786 | Metagenome | 127 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0151514_1022713 | F017968 | N/A | LKQTEFLIGLEKANNLATLSSQERLNLRETMRQTEAMEWIRRYRKKALEEGRGEAQYWWQQTLLDIAKKRGQAAADDLRKRMNDQRDKK* |
| Ga0151514_1022718 | F010821 | AGGAGG | MTDFTFSPADFNATEITVVANTPDGLQYLAERYGFACISINIRKSAAPDLADSFEFQGFSYS* |
| Ga0151514_1022719 | F029755 | AGGA | MTEFKLHYYFDDVVSYDNGTTLENVKVGYDYYPAEDNYPHEPDLAEIYDVFVFNLKGDDISCDLPLAEFQHIMSETKIHHARMLKEQNEI* |
| Ga0151514_1022725 | F065786 | GAGG | MTKDDLIALLRMTGAQEASIDAVCAAYDAGWNDALDDYAKRLKPLPFGKDTLDSFSVFIKSAKK* |
| Ga0151514_1022731 | F012435 | AGG | MSDIDLVKYGVLWQKVESMEAKIDKMESQLETLIELANKGRGGFWMGMVFVSATSTVLGCISHYWSK* |
| Ga0151514_102279 | F033290 | AGGA | MNREDMIRMAKEAGWQYAHGESGYEPLWEFAALVASAEREACAEICDGFYLSWIDIQGRYEFMGEGASECAGAIRARGQA* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |