Basic Information | |
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Taxon OID | 3300011115 Open in IMG/M |
Scaffold ID | Ga0151514_10217 Open in IMG/M |
Source Dataset Name | Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016May |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Chunlab, Inc |
Sequencing Status | Finished |
Scaffold Components | |
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Scaffold Length (bps) | 28475 |
Total Scaffold Genes | 46 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 37 (80.43%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea |
Source Dataset Sampling Location | ||||||||
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Location Name | Gangwon-do, South Korea | |||||||
Coordinates | Lat. (o) | 37.947421 | Long. (o) | 127.818872 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F022833 | Metagenome | 212 | Y |
F037627 | Metagenome | 167 | N |
F049485 | Metagenome | 146 | N |
F061649 | Metagenome | 131 | Y |
F102396 | Metagenome | 101 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0151514_1021714 | F061649 | GGAG | MRDQTDCHYPHTRLCLRDCEDGCRARKTVWRKRTIREIEDQEAEDEAFRRIPTKPYECKHLGICMDRPEHCLDCPSNNA* |
Ga0151514_1021717 | F037627 | AGG | MKPLICADCKWHIPSKQSSTVANYDRCKASETINLVTGDATYKYCETMRIAGNSCDLDGKLFELNQAEEETPNGN* |
Ga0151514_1021718 | F022833 | AGGAG | MATKLQDSLVRKIQENRELKDTIKDLHAQAEKDKEFLRQVQDESSNLELALKKCILSKAELNDKIEQLQDDLDKYVELYASTKIVAQALGEAVYYLTKEKTHG* |
Ga0151514_1021720 | F102396 | AGG | MLLFKTKRLERLEQEVVMLEDLFRSALRRIANLEEARWGLKVDGTPKAKPGRKVKDERIS |
Ga0151514_1021723 | F049485 | GGA | MAHSGLQPISNILGSKDIQSLQLWLKRVGASMPDISTVERKIMENQKKAPFVPLEMKGRMTKNTYKKQGSTEPDWKGTFMYKGETITFGAWENDAGYGPYYNIKLNDPNWNKQQQQYPKEVTDKPAKSYPKDSDVPF* |
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