Scaffold Ga0151514_10208

Overview

Basic Information

• Taxon OID: 3300011115
• Scaffold ID: Ga0151514_10208
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016May
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 28867
• Total Scaffold Genes: 47
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (12.77%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033794	Metagenome	176	Y
F054451	Metagenome / Metatranscriptome	140	Y
F073552	Metagenome	120	Y
F090397	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151514_1020814	F033794	N/A	MNIVKIYKDKDIIPTFTIESENIIDSSEYVILWDCKEEIYIDEKLIDTKYHTK*
Ga0151514_1020822	F073552	N/A	MWIFNLTAPYQFKCIPRYYNEGELTFYLRDELRDTTTEIEILETIYQNNILKLVFEEPILKEGQSFEITINEDDNLIYRGKAFSTAQTDLENFELNKGVLKV*
Ga0151514_102083	F054451	N/A	MEKITRSVIKLSEIPEHLQKNEIFNGHKIHTYTEFHIDDTEKDELSLWLIENYPTIKRKISFLIHIDI*
Ga0151514_102086	F090397	GAG	LIIHELAKKDAQWRKMALQICKCKDLADELVQNMYIKLSDKTIMVSDGYIFVTLRSLFYDSLKNNDILIDDFSKFEIEEEEYNDGIDYKELSKDLTWYERTLFELSTLHGQRELSRQTGIHIQTIHRVNKMVKIKLNGKKKD*