NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0151514_10192

Scaffold Ga0151514_10192


Overview

Basic Information
Taxon OID3300011115 Open in IMG/M
Scaffold IDGa0151514_10192 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016May
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)30433
Total Scaffold Genes42 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (19.05%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameGangwon-do, South Korea
CoordinatesLat. (o)37.947421Long. (o)127.818872Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F041191Metagenome160Y
F042157Metagenome158N
F044325Metagenome154Y
F049410Metagenome146N

Sequences

Protein IDFamilyRBSSequence
Ga0151514_1019210F044325N/AMKTLIQRLLFGYRPNRDAYFPRGGAKLTYKGGNAEAIHSALVLLKFQLQNGKG*
Ga0151514_101922F042157N/AMKLKQKYHSPDNRQLKKIADYLIYVLLPFIQTSLALAETQGLITLKQAFWGGLVATFLLVNTKFLTKFTTNKPTTTAVIDGDGC*
Ga0151514_101924F049410GGAMTRGTRYTNGKEVITFSKIDFIVIGGRKIDHVYFRRKDKVDLIMPLVEWNLKGKFEWEITN*
Ga0151514_101926F041191N/AMVEKMRLLWKPTKLTCDIIVPDLAKSHGVQKVIGFSRGWHHYNSIRLGIRKEDTYIVLYFYAYIKGQRTIQRIGRYEIGELVKCELNWGSYIECKANDGYAFRIAPRHSLPFGYQLYPYAEKDGVEGVKIDIDIVIMDLKIK*

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