Scaffold Ga0151514

Basic Information
Taxon OID	3300011115 Open in IMG/M
Scaffold ID	Ga0151514_10188 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016May
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011115 Open in IMG/M

Scaffold ID

Ga0151514_10188 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016May

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	30679
Total Scaffold Genes	43 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	26 (60.47%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

30679

Total Scaffold Genes

43 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

26 (60.47%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.947421	Long. (^o)	127.818872	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.947421

Long. (^o)

127.818872

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002826	Metagenome / Metatranscriptome	527	Y
F003304	Metagenome	494	N
F004010	Metagenome / Metatranscriptome	457	Y
F011649	Metagenome	288	Y
F033721	Metagenome / Metatranscriptome	176	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151514_1018818	F002826	GGA	MEVEARNRLKWACDILLSAREKLAVERDRANHGHAIDIIQIIALVDAAALVCKEVTEDK*
Ga0151514_1018819	F004010	AGGAG	MPLGKDVSKNMHELAMDNKKTGKARGAGGKVRSRKQMIAIALSAAGKSKPRKFRMRAGM*
Ga0151514_1018825	F003304	N/A	MKRALVTQAFGDDWKKVLDLTRPRMEAYCQRHKIDFLALEKPLVEPVQYSKSAIGNIMATKGYEQITFVDCDVLIANDCDDIGDGVEMFCAFDEGAFLDRKYEMGKLASAFGAQIDPRFYVNTGVFVISSKAVGVLSMPPLGLLPNHFAEQTWMNIMIHLWNVPLQELDPAYNCMTSVESHFGLDRYKDAYCIHYAGQSGDITKLIEQIKSDDAKLVELGR*
Ga0151514_1018826	F033721	GAGG	MRWIKKELDEDGKPEWAVYIDKAGEGNEEDWSHFDTYASRDEAVKACWNYTWEDYDCSNK
Ga0151514_101885	F011649	N/A	MDEISGSDSLVKKSPVEKSANGKTIFTEKIADEIIAACGSGFTIEKAGALVGVNASTIRTWAQRRPKFAQAVETARKRHELSLLRDIELAGQKSWQAKAWMSERVYGYAQPSARQHVTQEVTHGISGNLAQLLAGIAMKKKAQVIESEVVKEKPALTIRDNSYCTTNDLQTIGTTTEMKVSKPRKVSMRRRKPRAESLAKYTTTPPATPPATI*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0151514_10188

Overview

Ecosystem & Geography

Associated Families

Sequences