Basic Information | |
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Taxon OID | 3300011115 Open in IMG/M |
Scaffold ID | Ga0151514_10176 Open in IMG/M |
Source Dataset Name | Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016May |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Chunlab, Inc |
Sequencing Status | Finished |
Scaffold Components | |
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Scaffold Length (bps) | 31968 |
Total Scaffold Genes | 50 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 39 (78.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea |
Source Dataset Sampling Location | ||||||||
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Location Name | Gangwon-do, South Korea | |||||||
Coordinates | Lat. (o) | 37.947421 | Long. (o) | 127.818872 | Alt. (m) | Depth (m) | 0 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F007742 | Metagenome | 345 | Y |
F014122 | Metagenome / Metatranscriptome | 265 | Y |
F030016 | Metagenome / Metatranscriptome | 186 | Y |
F033355 | Metagenome | 177 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0151514_1017636 | F014122 | N/A | MSFFGPDLRNAVAIGLGGVVSLFSGRADEQAQSNLLCENSDNLVQEDGGLILLE* |
Ga0151514_1017640 | F030016 | AGGA | MKTVAPIAKLNSREPKMSGGGMPDRNKETYSPTANCHATIPSGNNVKATVDKVLNKIK* |
Ga0151514_1017648 | F007742 | N/A | MLRVLHHMTYFNTKTAAQALADTLAAQDADAWRYEVHASPKGFYVAVFDFDHFFLGNL* |
Ga0151514_1017649 | F033355 | AGG | MITIGKTTYRTHRADIFGHHAKCTGKHKPVKSKGAEKRLYPPMGASMSTAEYVAAYEMMNAPRCIGPWGWQPLSTKRTVAEGVDAAWVE* |
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