Basic Information | |
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Taxon OID | 3300011115 Open in IMG/M |
Scaffold ID | Ga0151514_10151 Open in IMG/M |
Source Dataset Name | Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016May |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Chunlab, Inc |
Sequencing Status | Finished |
Scaffold Components | |
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Scaffold Length (bps) | 33912 |
Total Scaffold Genes | 41 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 26 (63.41%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea |
Source Dataset Sampling Location | ||||||||
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Location Name | Gangwon-do, South Korea | |||||||
Coordinates | Lat. (o) | 37.947421 | Long. (o) | 127.818872 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F012328 | Metagenome / Metatranscriptome | 281 | Y |
F015856 | Metagenome / Metatranscriptome | 251 | Y |
F020635 | Metagenome | 223 | Y |
F026827 | Metagenome / Metatranscriptome | 196 | Y |
F100336 | Metagenome | 102 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0151514_1015114 | F100336 | GGA | MIARDAEIRKATEQARVSDTLILQKINASHRVAFAEKFPGQIEHILRLLTERLQAGLDKRDGVELDNPDTWKLSSKELSDLSTAIHHVYIVKEKLGNVQSNT* |
Ga0151514_1015115 | F012328 | AGGA | MNKKLSPPPTQEVASPWDEEPTQQEIIDVAEQVAGIQPKSTSTADFDLDGLMTDFPTAKELERFVFDETGIVLNLKGRANKLKYQTAMDVLNGLEVDPKFLGGDNPYIDRTELVPVEDLKPVPARDNHLPEPTQLQNIFVSNVIPHTDFEARMQDKKVSVYFRKYKSGEISYEIVGPIEQRPHGMKLDKYGRERPEIIKWVDPRSGEQTIVRNDGTLTPQGRKLRGLMQSFKVNTSNQWDTWIDREFISLGGDGVTDVWDLTK* |
Ga0151514_1015117 | F026827 | AGGA | MKSTNPMGNKEINQKRGPTTGNAGTMTKRDTYVAEKAASSGEKSVLAKMVTSALEMRGRGQAGVTNPALEGVSGNTNVGPKANSTANGSKLPAKYKSPKK* |
Ga0151514_1015140 | F020635 | AGGAG | MEFTLKQLSWIVIGSLGIGGTGYLSLNEKIDALDKKTAIIHTNSEHQSKALERIETKLNSR* |
Ga0151514_101517 | F015856 | N/A | MINEDTVEFYNSRLTVDLSQPSKLTTSQKDQVKHYGSLAEGLLKNKDLAMFVHHFKFSLADELASIRSHQPDDNARRIAVSNELAGIDNFVSSLKRAVYLKNRIVSTNEVPDIN* |
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