Scaffold Ga0151514_10036

Overview

Basic Information

• Taxon OID: 3300011115
• Scaffold ID: Ga0151514_10036
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016May
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 59718
• Total Scaffold Genes: 79
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 61 (77.22%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Associated Families: 9

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002286	Metagenome	574	Y
F002653	Metagenome	539	Y
F002933	Metagenome / Metatranscriptome	519	Y
F004759	Metagenome / Metatranscriptome	424	Y
F005234	Metagenome / Metatranscriptome	407	Y
F036205	Metagenome	170	Y
F050379	Metagenome	145	Y
F087179	Metagenome	110	Y
F097207	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151514_1003613	F050379	AGGAG	MTDAQLQMMADDLVAKYKHEIARDGDWWHGTDDYSFNIHSPDEDDWFNVNVYKVDPVTGMDNYEWMIDLPHVFIKGEIKCMT*
Ga0151514_1003620	F097207	AGGAGG	MPDIQTALSNALKTTINDWEKDDMQITQTNTQSKSTKFFDITNNVTRATFDYVKNHPNETSPEICASMARLGYKESSVGSLIAQFAKQGLAERDDRGRYITIVDEYRPLKAKKKILTVVPKPVEAKRKYVKKSDTAGGIGALLKEKLENTPMPSQDALDAAAYAMGTARVDVNKRMVSLVRVKSPEDVLKDMTVYQAHELYRHLKEMFGG*
Ga0151514_1003627	F002653	GAG	MSDDEQEHFRLLIHKLVMCYGEGKAQGVVVIGRAEDQLAGVVTLNCNEMEASQLMLAANDFFGFLNVLDAPPKENFN*
Ga0151514_1003637	F087179	AGGAG	MKYSQSKPLVEELMNLAILFHGSPTMLRTKIYDAIDKYIPDLDPACMERGCTCIDDYKEKNS*
Ga0151514_1003646	F002286	N/A	MAYSQKVIDAVMAAKKTPGNQLGRWAIYLDFPVTKIAYALGVTRQTVYNWFEGKDVFIAYQNRVELLLEIMKSSKDAQQAWRRICKEYNLEP*
Ga0151514_1003657	F002933	N/A	MLDVADYPTRTDALERRTQRLEEEYKQALKMKKVKDKIDDLEFELYVKKAEQNQLRLEIFTNRKVDILV*
Ga0151514_100366	F036205	AGGAG	MTNKTQAFKTLDTFADSRVTLITGMQKAGYATVEACRPIVIEWACKKTGAEYRETKAGKVVLVSDHPKYEGAKTTVRDIMLMIEGTTRRASSAKKEPLDPVAKIIEAFGKLTPAQQRKALAVLVA*
Ga0151514_1003669	F004759	AGGAG	MDKKDLAQDKKMIKSAVGKHEKNMHPGKAPTKLAKGGKTNEMMLQYGRGMAKVKNQGK*
Ga0151514_1003677	F005234	AGGAG	MAMQYDVLSAAAAAGATTTIFNGPARIKGLTISYPSGGTVVLNDGTGGTAKFSFTAPAAAGSINVVIPGEGIRCATNISAVCAASTTAVVFYG*