Scaffold Ga0151514_10031

Overview

Basic Information

• Taxon OID: 3300011115
• Scaffold ID: Ga0151514_10031
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016May
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 61312
• Total Scaffold Genes: 74
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 56 (75.68%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001817	Metagenome / Metatranscriptome	630	Y
F008750	Metagenome / Metatranscriptome	328	Y
F038150	Metagenome	166	Y
F041638	Metagenome	159	N
F049482	Metagenome	146	Y
F050213	Metagenome / Metatranscriptome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151514_1003123	F001817	GGAG	MMQTDVQAAHLTAAGSFILGRTRLKGIVVSPKVSTAATFEIRNGSATAAVLFTMDLASVTTPVNFNITIPGEGILATTGLHLTTSVGTVVGIEVFYG*
Ga0151514_100313	F038150	N/A	MTDDDFRRLESKVDKLTDAVGKLVLFEERQATQGHRIGNLEVKSGIYDVTLQRVDRKIDQWVNRGMGVWAAATVVFSLVQFWKK*
Ga0151514_1003145	F008750	GGAG	MNQLITIFRNLFRKPTPLEVIATELAEAHLDRLQAETAVEYAQSVVAYNVARIDRLNRRREEYK*
Ga0151514_100315	F050213	GGAG	MPPILKSKTVWFAIILAVLSIMQAYVFLLPITPVGQMLVGIAIAVAVTLLRIVTTLPLSQK*
Ga0151514_1003160	F049482	AGGAG	MTQVNGKRDYKHAYKLQKKTGETQDQLERQKARGIYDKQNVDRAGKDIDHIKPMRAGGKTAPGNLRLRGKKANEADNGK*
Ga0151514_1003171	F041638	GGA	MAQKNVVAPRLPSPPQEYDPVYMNQLLSLLRLYFNQLDNAGPMAGSTQINGTTVVSGLSFFPTSGTAPSLPTDADFANLRIGDVYRDTQNGVMSNNQTLKIKTAL*