Scaffold Ga0151514

Basic Information
Taxon OID	3300011115 Open in IMG/M
Scaffold ID	Ga0151514_10029 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016May
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011115 Open in IMG/M

Scaffold ID

Ga0151514_10029 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016May

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	62227
Total Scaffold Genes	86 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	70 (81.40%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (100.00%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

62227

Total Scaffold Genes

86 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

70 (81.40%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses	(Source: UniRef50)

Taxonomy

All Organisms → Viruses

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.947421	Long. (^o)	127.818872	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.947421

Long. (^o)

127.818872

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001715	Metagenome / Metatranscriptome	647	Y
F002405	Metagenome	562	Y
F012212	Metagenome / Metatranscriptome	282	Y
F026483	Metagenome / Metatranscriptome	197	Y
F057986	Metagenome	135	Y
F067676	Metagenome	125	Y
F082232	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151514_1002910	F001715	GGA	MTALVPNIEENIPLPDNAKDAFPELTPAQELEMRANVVKLMSDLTGAVLSPTSDNMDQARQLARDMITDSQHRPDFAKYPNETLALLAGMVAQMNVSIVEELSDFKMYVVNKLVQEVENARDPKVRLTAIAKLGEVDGVDAFKKRTEITHKIQTIEEVEKELLETLGALENRAIDVEAREIVRLEQPVDD*
Ga0151514_1002943	F012212	GGTGG	VIDQVVSAENPWPNTETKTVLVCRIPKKDDRPSTNEFVDKDGRICRWVVMDKK*
Ga0151514_1002946	F026483	GAG	VISIPVLYICVAAHCEFLQQLTHYADRKLCMEAAEAKKQEYIRLGAKVDATCIDLIVQKRGSYES*
Ga0151514_1002954	F002405	GGA	MILEPEWLFPFSGMEVGDSFFIPTLRFAEMIYALDCGAKRAGILVKSFVTHKDGHLGVRAWRVR*
Ga0151514_1002964	F067676	AGGAG	MSKEEALKLVRLLSAMESWAFSQTNRIPDYLIEDVGTAMKILERIILKEKE*
Ga0151514_1002970	F057986	AGGA	MIEFTKRLLAAPTPLEMAACELVKAQREKLEAESALDYAYSIVEYNTQRIERLKRRVTELQGEQA*
Ga0151514_1002978	F082232	GGA	MSMEKDWMNREGIPHKNGHVRFYMIGLEEGVYGYLGWFDMTDWDEGWKQVWKAAKKRHYSDGEDFQVMRYDQLIDLQRNVASALEEALEDKDETTWLWWYNKRKAEAELKSKGEQA*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0151514_10029

Overview

Ecosystem & Geography

Associated Families

Sequences