NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0151514_10029

Scaffold Ga0151514_10029


Overview

Basic Information
Taxon OID3300011115 Open in IMG/M
Scaffold IDGa0151514_10029 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016May
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)62227
Total Scaffold Genes86 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)70 (81.40%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Associated Families7

Taxonomy
All Organisms → Viruses(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameGangwon-do, South Korea
CoordinatesLat. (o)37.947421Long. (o)127.818872Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001715Metagenome / Metatranscriptome647Y
F002405Metagenome562Y
F012212Metagenome / Metatranscriptome282Y
F026483Metagenome / Metatranscriptome197Y
F057986Metagenome135Y
F067676Metagenome125Y
F082232Metagenome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0151514_1002910F001715GGAMTALVPNIEENIPLPDNAKDAFPELTPAQELEMRANVVKLMSDLTGAVLSPTSDNMDQARQLARDMITDSQHRPDFAKYPNETLALLAGMVAQMNVSIVEELSDFKMYVVNKLVQEVENARDPKVRLTAIAKLGEVDGVDAFKKRTEITHKIQTIEEVEKELLETLGALENRAIDVEAREIVRLEQPVDD*
Ga0151514_1002943F012212GGTGGVIDQVVSAENPWPNTETKTVLVCRIPKKDDRPSTNEFVDKDGRICRWVVMDKK*
Ga0151514_1002946F026483GAGVISIPVLYICVAAHCEFLQQLTHYADRKLCMEAAEAKKQEYIRLGAKVDATCIDLIVQKRGSYES*
Ga0151514_1002954F002405GGAMILEPEWLFPFSGMEVGDSFFIPTLRFAEMIYALDCGAKRAGILVKSFVTHKDGHLGVRAWRVR*
Ga0151514_1002964F067676AGGAGMSKEEALKLVRLLSAMESWAFSQTNRIPDYLIEDVGTAMKILERIILKEKE*
Ga0151514_1002970F057986AGGAMIEFTKRLLAAPTPLEMAACELVKAQREKLEAESALDYAYSIVEYNTQRIERLKRRVTELQGEQA*
Ga0151514_1002978F082232GGAMSMEKDWMNREGIPHKNGHVRFYMIGLEEGVYGYLGWFDMTDWDEGWKQVWKAAKKRHYSDGEDFQVMRYDQLIDLQRNVASALEEALEDKDETTWLWWYNKRKAEAELKSKGEQA*

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