Scaffold Ga0151514_10028

Overview

Basic Information

• Taxon OID: 3300011115
• Scaffold ID: Ga0151514_10028
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016May
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 62287
• Total Scaffold Genes: 97
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 84 (86.60%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012212	Metagenome / Metatranscriptome	282	Y
F025942	Metagenome	199	N
F026483	Metagenome / Metatranscriptome	197	Y
F105044	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151514_1002862	F105044	AGGA	MLTTQSQIEAFRLRSLRQGLKLEMRGMRLTSKGQTCYAILKGMGYKGTKQQVFDQLTIDSENAMAEAINS*
Ga0151514_100288	F025942	GAGG	MSNESWVAKNIQPITVLFFLFSYFCFALLSVFELETRGAYVDLLGQAMIIVITAIFAGKTAERIVDLRTNKPNKD*
Ga0151514_1002890	F012212	AGG	VIDQIVSADSPWPNTETKTVLVCRIPKKDDKPGANEFVDKDGRICRWAVVNRK*
Ga0151514_1002893	F026483	GGAG	VISIPVLYICVAAHCEFLQQNSYYTNRQECMEVAEKKRQEYVKLGAKVEATCIDVVVQKRGSYES*