Scaffold Ga0151514_10026

Overview

Basic Information

• Taxon OID: 3300011115
• Scaffold ID: Ga0151514_10026
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016May
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 63349
• Total Scaffold Genes: 79
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 62 (78.48%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000332	Metagenome / Metatranscriptome	1283	Y
F005234	Metagenome / Metatranscriptome	407	Y
F006894	Metagenome / Metatranscriptome	362	Y
F007517	Metagenome	349	Y
F042223	Metagenome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151514_1002634	F006894	GGAG	MFTWNYRIVNTKSLNAGEDWYCLQEVCYDKKGKPTGYGSPCTGSEDMKSFKRVFKMMKEALKLPPLQEEDFTKRATK*
Ga0151514_1002643	F007517	GGAG	MASLLEVLNKKLDEHVKQLVDVVSAGGAKSHEHYKELCGTIRGLQTAQYELADLVRKTKEYEDD*
Ga0151514_1002650	F005234	AGGAG	MMQTDVLSKAAAAGTTTTIFAGPARIKGVSISYPSGGTVVLNDGTGGTGMFSFTAPAAAGSIYMIFPGEGIRCSTNISAVCAASTTAVVFYG*
Ga0151514_1002660	F042223	AGGAG	MAYTKSADGITKKSKTDAQIFSTSGPSQKEMMGGKGKGKGKTNADMLSMGRNLAKIAAQKRG*
Ga0151514_1002673	F000332	N/A	MRWLILLLLLGLVGAVAKNGCHVREFYGIGYTVHDPTLRHREMMAWLDKNAQYCKSTDYTVIWNNLAEWAGAADSTWLRAKVVHGYKDALDREKK*