Basic Information | |
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Taxon OID | 3300011115 Open in IMG/M |
Scaffold ID | Ga0151514_10026 Open in IMG/M |
Source Dataset Name | Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016May |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Chunlab, Inc |
Sequencing Status | Finished |
Scaffold Components | |
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Scaffold Length (bps) | 63349 |
Total Scaffold Genes | 79 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 62 (78.48%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Associated Families | 5 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea |
Source Dataset Sampling Location | ||||||||
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Location Name | Gangwon-do, South Korea | |||||||
Coordinates | Lat. (o) | 37.947421 | Long. (o) | 127.818872 | Alt. (m) | Depth (m) | 0 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F000332 | Metagenome / Metatranscriptome | 1283 | Y |
F005234 | Metagenome / Metatranscriptome | 407 | Y |
F006894 | Metagenome / Metatranscriptome | 362 | Y |
F007517 | Metagenome | 349 | Y |
F042223 | Metagenome | 158 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0151514_1002634 | F006894 | GGAG | MFTWNYRIVNTKSLNAGEDWYCLQEVCYDKKGKPTGYGSPCTGSEDMKSFKRVFKMMKEALKLPPLQEEDFTKRATK* |
Ga0151514_1002643 | F007517 | GGAG | MASLLEVLNKKLDEHVKQLVDVVSAGGAKSHEHYKELCGTIRGLQTAQYELADLVRKTKEYEDD* |
Ga0151514_1002650 | F005234 | AGGAG | MMQTDVLSKAAAAGTTTTIFAGPARIKGVSISYPSGGTVVLNDGTGGTGMFSFTAPAAAGSIYMIFPGEGIRCSTNISAVCAASTTAVVFYG* |
Ga0151514_1002660 | F042223 | AGGAG | MAYTKSADGITKKSKTDAQIFSTSGPSQKEMMGGKGKGKGKTNADMLSMGRNLAKIAAQKRG* |
Ga0151514_1002673 | F000332 | N/A | MRWLILLLLLGLVGAVAKNGCHVREFYGIGYTVHDPTLRHREMMAWLDKNAQYCKSTDYTVIWNNLAEWAGAADSTWLRAKVVHGYKDALDREKK* |
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