Scaffold Ga0151514_10024

Overview

Basic Information

• Taxon OID: 3300011115
• Scaffold ID: Ga0151514_10024
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016May
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 64869
• Total Scaffold Genes: 88
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 73 (82.95%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Associated Families: 10

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000843	Metagenome / Metatranscriptome	864	Y
F001715	Metagenome / Metatranscriptome	647	Y
F002405	Metagenome	562	Y
F011292	Metagenome / Metatranscriptome	292	Y
F019309	Metagenome / Metatranscriptome	230	Y
F027781	Metagenome / Metatranscriptome	193	Y
F045701	Metagenome	152	Y
F057982	Metagenome	135	N
F081271	Metagenome	114	Y
F085621	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151514_1002414	F085621	AGGAG	MGRFKDIAIEMAYRADQDCPNDDELRVLMENFKPSPDELQAELDELQAHAVSLPVLSIQPEVKVYLLMKNGFPQRSYTDRALAFYECWVCTEGDLYAETPDDYYVVEIMHDISTLQEFV*
Ga0151514_1002419	F001715	GGAG	MSEQIMPYIEENIPLPKNASDAFPDLSPSEELTMRANVVKLMSDLTGTVLAPTQENADQAREIARSMISDPTLRPDFSKYPNETLAMLAGMVAQMNVSIVEELSDLKMYVVNKLVAEIESAKDAKTRVAALSKLGEIDGVDAFKKRSEVTHKIMSIEEVEKELLETLNKLEDKAIDIEAREIVLQKE*
Ga0151514_1002423	F019309	AGG	MMSYEVKQALDYTAKQIDEKVKQLEDALGARAAKSYDEYCGMCGEITGLLTARRYITDLTKNMENSDE*
Ga0151514_100245	F027781	GGAG	MNTELSKPKHLISLASSAVLVSVDANVWSATKQDRGISNDVADSKHADRKAGKYVKNLLADHPKHKALVNYRQTIYNWVKRRTYRWNNSQDLLPSIDVPKFKQEFSEHKASFEKLLADFILSYDGIVSDMAFKAGGMGDMFDRLDYPPKEALSAKFGVELYVSEVPMSDFRCGIANDIADDLFSTYSKQAEDIVSSIVDEQKTRFIEVMQSISHCCGVDEIGVDDNTGETKTRKRKIYDTTIQKALEMCETFKGFNLSDDPELEMARASLERALADVDAKSIRESDAVRSSVKEDVDSILSKFSSFQCV*
Ga0151514_1002461	F045701	GGA	MMPPIREKLYEDANGEVLCDYLFDRTKVSLHLNFNDGAWTPSKFKQYKHIFEGLVSDIKDKSYTEVYALPFENDVKAQKLIAMFGFKEFDRRRGFVLMKREV*
Ga0151514_1002463	F000843	N/A	MPLYQVHPRELPEVWPVAAPLIQRAIDLDPDLNKIELIEFAVRTGKTYLVVWDEPGEGITGAAVVDIVDTPCERIAHGNLMGGKAIVRPHVIEELYKWMRLHGATTAQLWAKGTLVNMYEKIGLKVTHQVMRIKL*
Ga0151514_1002466	F002405	N/A	MVPEPDWVLPFEAMEVGDSFFIPTLRFAELIYSIDSSAKRAGIRVKSYIVVKEDHIGVRTWRIR*
Ga0151514_1002475	F057982	N/A	MKYRITYSDGCFADWDAMQKDLAWGYRWGIFLYAVRCNVGAWRAGHKSFKYWRYVMNRKPKITRGKL*
Ga0151514_1002478	F011292	AGG	VVTPKSFDIDTCKEVVGDERMRVIEAKARQDADSGVMEKFQLAEAYWDKVKSIMEYVIYTTAHKKRMERVARMKEREKNRA*
Ga0151514_1002486	F081271	GGA	MSRYILAGFESEELEQKIKDHQAFALVRELNFKYNLKVLGTTEYQHGTAFQMCHTNGMAVGKVFVRAIEDGKTEYCYRTPYYKKERGSSEEDKETLRSVKVSSLMSSIKRVKAIIDIPKLLGKKMGKLSDAKDIMEKAMGSAYKSTGELSPNEIQALICAYLGESPSGNHITIDALKCKIVLDKYNEADRVQVKKLEEVGRFFHNPFYMIGADSFGHFIVGKVKVTGEKQYDIVEPFKRYKDITERDDLIPVMTMTKLAYEGKGYRLQNGYIPAQDMYDENLDAVFFYHSQATHYDYIWMATPC*