Scaffold Ga0151514_10018

Overview

Basic Information

• Taxon OID: 3300011115
• Scaffold ID: Ga0151514_10018
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016May
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 69174
• Total Scaffold Genes: 123
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 68 (55.28%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010398	Metagenome	304	Y
F015339	Metagenome	255	Y
F018175	Metagenome	236	Y
F038678	Metagenome	165	Y
F040107	Metagenome	162	N
F049636	Metagenome	146	Y
F090404	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151514_10018104	F038678	AGGAGG	MKLNFEKIFFYFLLVIVSGSIGYAIKPVENIDQKVLQEKYMAQQKACTQAAYIVANYTNKNYYQPKTKKEWAIERMMRN*
Ga0151514_100182	F018175	N/A	MDKEPKNQKQYYHNKVREFEKRTGINMNVKNVSKFYDTNIEDVDYNTPAAMDMMQKHGCYIYHDLLVEEDPRSNGTNWLKFGYADVDGKTYKYYYETKQWGQEILKIDLEHYKNKTWKAAKLDKTNFSYTLDPGEDYLPYAIENKHIGSNFDDFAKENNIELKRDMNWAIKMIESGKMVSREGNTGLTLFPKKYDYAESTITTEDLFAEDWVVVPNKLFKDVMDDLNAGKTIRRKTWPPDWGVGKYARYGKIIYLDLIADDWEVEDVVAEVNKQQEQILKDRNEL*
Ga0151514_100183	F015339	N/A	MNFDTKIYSEEYVKGRIWSFIRFNKYLREIANIFCEEFQYDKDDIIEVSMSDDGKTVWIHFDSGTIGFASELLWDKNVRETFKKSYEVD*
Ga0151514_100185	F049636	N/A	MTGREALAKLEEGFTLRRAYWETDVKCKAYFLKDNKTIPEYVPDDPKLAGYISIYDALDNGDFFEDDWEIVDEIC*
Ga0151514_100187	F090404	GGAGG	MKFADVIDSLMAGKRVRKSNWESKTAFFLYDKEDNTFDFYEVLDGEVCRTQFYSTLNLTPKDLMSDFWEVVE*
Ga0151514_100188	F040107	GGAGG	MTGIEALSLLKDGKTLRREFWEPYEKCKALDFFGQWIVHLVKEQDDEKLDKELESIFQNSFTFTKTSFDDFFGLFDTIDAGEFLHDDWVIVE*
Ga0151514_1001881	F010398	AGGAG	MEISIEGSVEVNYHLMIDEDVFNDCCEEAGLDPANFKKFTKAQWDELNPHLIQAVVDNVTNDDYTEIHEESTVYADTLTISENYKMTTVYYGENRKLESIEIE*