Scaffold Ga0151514_10003

Overview

Basic Information

• Taxon OID: 3300011115
• Scaffold ID: Ga0151514_10003
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016May
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 160798
• Total Scaffold Genes: 231
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 36 (15.58%)
• Novel Protein Genes: 12
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 12

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025686	Metagenome / Metatranscriptome	200	Y
F034854	Metagenome / Metatranscriptome	173	Y
F054683	Metagenome	139	N
F060728	Metagenome	132	N
F074497	Metagenome	119	Y
F078411	Metagenome	116	N
F085381	Metagenome / Metatranscriptome	111	Y
F086833	Metagenome	110	N
F090100	Metagenome	108	N
F092027	Metagenome	107	Y
F098949	Metagenome / Metatranscriptome	103	Y
F104777	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151514_10003103	F025686	N/A	MTQTRTYIKVTYVALSQWGKPIATAHTEEDLKAGIDEYYGIGTDSKVTYVEWVPFNSKYPDELEGHHVYEVDDFNGGLELERVKVYCVDFYPHTKYEKEI*
Ga0151514_10003117	F090100	N/A	MSKSITLSGNQELQFISDSWEKTVTVYLFDTLSDTRVTLTEFYNGRWNSKSSSHLDKFFELIKINPKIKVAMKKAFSELRTETPVDTFSTTMKCFKRRFIIKVKKLVK*
Ga0151514_10003122	F104777	N/A	MGGNIMKKLILFLIVAVLASCSAPQKGYNYKHHSNRQQIMYKQTKRVNKGKSQLNHQCSPKKHR*
Ga0151514_10003193	F092027	N/A	MENRRIIKVEVPKEIWDADMSIFNCNRSLVRAWMESIQDVISQLEK*
Ga0151514_1000320	F074497	N/A	LTSAIACGQHLTPKRIVFSGDTGIFFTYKQEIELLVKFKQFEGCKLEKAKWERYAMDADLQIERERSAYDHLNGEYDKLLDVSKDFQKKYNDEYITHENTKIKLDDMTDKKNKWVTSTFVTGGVAVIIIAPLVYLLVH*
Ga0151514_1000378	F054683	N/A	MNKTESRKALNKLVFEMVTGLGYEVVDDGDGGRVTFIKPDHKNYHDSIEYHKSRFDVCVLNDTSDKVKEDGETIEWFINIQRKALDI*
Ga0151514_1000379	F085381	N/A	MKTVLEQLMELKDKISAIEIAVCGETICSDGACGCGCDESPVEVEDEGPEFDSAGFSKEDRVVDGQYMVTEDDKYAGHVHLTKAELIDFATRLTERVIESIKKAVTDMELNADDLVTLELNNWSNVIEVELDNNTLSNNVNSEIEDAVCLDVDSISDEIDDIFGDMYLERIS*
Ga0151514_1000381	F078411	N/A	MDYNKHTDEVLERLQAHQVLEILAMANKSISQALTQIQELEHNSMMYLDMRPTREIMDDINALHLHLHFLDSAKSFAKNEIHEIGFYLN*
Ga0151514_1000382	F098949	N/A	MELLKHEIEGQVVENTYTIQHLKEGVLVYKEFIDSSNGKCIDFILRSKDGYEIDDANLVEEVQEFIDNL*
Ga0151514_1000388	F060728	N/A	MQKGRPVVEGSARQARLAARAARVAANGGTVKRGRPSKPKAEVDQVEVEQTEATPEA*
Ga0151514_1000393	F086833	N/A	MSKIAELLGLKAQVAKLENEINNETVTFTKEELIEFTKTISNAVANGVKFELSKKDNFDFTNALYSKKSDVIGGIEVKVSRGRVLNEVVDSIDWVLDDENVESVVETVLEGLGK*
Ga0151514_1000396	F034854	N/A	MTVQELIDQLTELKNEGFGETQLVLSVSDHTDFTYHFDFPGFDVGPVYDESYDWENEDSGFPCEDEEGEELDYVVCEVSI*