Scaffold Ga0151514_10002

Overview

Basic Information

• Taxon OID: 3300011115
• Scaffold ID: Ga0151514_10002
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016May
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 161982
• Total Scaffold Genes: 251
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 60 (23.90%)
• Novel Protein Genes: 15
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (26.67%)
• Associated Families: 15

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015952	Metagenome / Metatranscriptome	251	Y
F020696	Metagenome / Metatranscriptome	222	Y
F020908	Metagenome / Metatranscriptome	221	Y
F025504	Metagenome / Metatranscriptome	201	Y
F031091	Metagenome / Metatranscriptome	183	Y
F031500	Metagenome / Metatranscriptome	182	Y
F032541	Metagenome / Metatranscriptome	179	Y
F042902	Metagenome / Metatranscriptome	157	Y
F053885	Metagenome / Metatranscriptome	140	Y
F057131	Metagenome / Metatranscriptome	136	Y
F061656	Metagenome / Metatranscriptome	131	Y
F061834	Metagenome / Metatranscriptome	131	Y
F092062	Metagenome	107	N
F097338	Metagenome	104	Y
F103257	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151514_10002101	F097338	N/A	MLRNPNTIPVGDTVIEDPTLEPYFIVNSSSGGYTVFEKVNRGKDDRAYLRSVCYPSTFNHALKVIAKEKLNTSENNHYTSIQEYISKWESITKSIENATLIEL*
Ga0151514_10002109	F103257	N/A	MKAQQNIHQLNNVAQRAISIWSDSLCNDIIFEGSVLGFTYNNEPKQTKTGI*
Ga0151514_10002138	F092062	GAG	MYKTRIEKDHFNEIGSLISSRIIIEIPLPLELLQDCYSYTAMDAPSEIKRMLIESVGVAVDEIILGNRPKHIDEQWLKSKLTKVKVL*
Ga0151514_10002149	F020908	N/A	MFKRFFKYTPTQQEQQFIDIVNKLLLHPKTSLRMTPLTDKYFLINEQKHYYVLLKNNGIQITNSKFSFAKSLHPKAYDYIINMIHDNMEASRQALEDRLFKNETDTLDAVLNNL*
Ga0151514_10002156	F020696	N/A	MKKLETCQHCGEQKEDCYHGFISMCLPMPEAEAKIDKWGREDWFKNLERTDLTEEESKELDDLCFYDQMLNTVGRGIQCDDCGRKESELYEKYYPKSLQS*
Ga0151514_10002164	F042902	N/A	MTLQELINLAGDRDLSKSYPKADGVYIWDYKLQYKQDFELELVLIPSDSSKAGFKDKVSVQELIDYVLDQSIFTELEIVGVEGLTIAKV*
Ga0151514_10002208	F032541	N/A	MSLINEIKEMLSEVTKVNFKGNKFVLKIDVNEDPNKKGIKIQFLPTTFAGMSKQQQDDIAMDLAAKLNQGLAPLGLTVERDRELKDKTIVGFFIYIEYLDKIIINALNQASKEPDTNN*
Ga0151514_10002209	F061656	N/A	MAQFCFYSKNNPTQEPVGVIHATSREEAVKFFSLSKQLSIPDFLTIFEVKSYTYGAQEGITESNKQLLKG*
Ga0151514_10002210	F061834	GAG	VARDIMEKKLFIESIVLLKEIEDRRDFMEEEIGMDMSIYEDKFLQIIENLFKVHFNKEQFALIQYYLYKVPTIEDWDGMIDLSDGKDMITVKFETPDQVWTVINSLK*
Ga0151514_10002216	F031091	GAG	MVKQQQPYIKTFVCDVTGIKTTYTYNGSSIVNGIIKAEFDYPPGYLEAFNKKEKRQDNLPKTKRLYLNPVTGNEVSYARAKALKII*
Ga0151514_10002219	F053885	N/A	MDGKVKTPKELMADLNGNFIQVIKKNGKTHDKLYKDPQRAIRGVGGVEYVKYLREVLKEQVNAKYVEEDSLTGTPENEL*
Ga0151514_1000229	F031500	N/A	MISISKILKEILDPTQEYQELVNDIIDQGGEYLGEGDYGVVFSVGDKVMKVTTDSEELEDAQQIKQQKTKYFVYIYDVEVRNPKLGIITMEDLEPFTGSEQDVPIDDIMEEADMLGIYPDLEGPGGSIKMDNLMQDKKGRIKVIDV*
Ga0151514_100026	F057131	N/A	MRNKDLFEQKLERFEAEVKNIGYNIHKNELDVAYSLVEVLLEKVGDLRTLLNTEHQD*
Ga0151514_1000262	F025504	AGG	MKIKNLINEVTFTMYQGLVRVGHTDEITASEVADFVRAMPGVTRVSAVDSNEDTNIVILKVKILTAKPGPVVFEKLKKDTFKLVPNIKKVEISIKSIEKIE*
Ga0151514_1000299	F015952	N/A	MSKNSTKSQYEQLMAWLPTLNQPKVAKEQSSTKFSKADHYKSKGAYGKAGN*