Scaffold Ga0151515

Basic Information
Taxon OID	3300011114 Open in IMG/M
Scaffold ID	Ga0151515_11088 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011114 Open in IMG/M

Scaffold ID

Ga0151515_11088 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	10165
Total Scaffold Genes	18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (27.78%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

10165

Total Scaffold Genes

18 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (27.78%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.947421	Long. (^o)	127.818872	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.947421

Long. (^o)

127.818872

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000922	Metagenome	833	Y
F005388	Metagenome / Metatranscriptome	402	N
F010673	Metagenome	300	Y
F029798	Metagenome / Metatranscriptome	187	N
F038648	Metagenome / Metatranscriptome	165	N
F068565	Metagenome / Metatranscriptome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151515_1108813	F010673	N/A	MNPKLIPILQRIIARDSVLSSFDADNLPQSALAYVRSHYLNDNFLWLTPEDQDVLEELPPFADNLSESIRPGGGIGNTDSNEYHIFDDGSLWVKTNAYSSVWADATDYAVEILLPRMELSRMDAQLLRAIEMDDAVESVRADFYSSFAQVLNRDCGIAYCDARGHWDAWSRQAPDSLTEELELGGSHSGRAEGLRFASEYTVTA*
Ga0151515_110882	F068565	N/A	MLTERSIFSLCETLPNGILQVRLSDQILDGEKVKATTYRRYCLTPGSDLTGQPEQVVKIANAIWNAECVTAYQQEMANNQRIK*
Ga0151515_110884	F029798	N/A	MPIITCADAATLIAEAQGASCMSPRERILLEIGLLWEAATLGGTADITADNTVISADVTIITADMTEFL*
Ga0151515_110886	F038648	GGAG	MPSFTLPKGVEVPENLAEGEAFQTMATILLGKNGKAEVIEIDGIAIPGYEKKSKGKKLAERGEEEEMEVEEGAAPGGGGFIAEVMQRGRGPMA*
Ga0151515_110887	F005388	N/A	MACTNVFNAFAVATESLAQDVYKRASYRSMWLNMIERGEYPQGTGLTQTSFTTTSIEPTAAEEWSAITLASGSNSGACDVTYNDVPVGYNAVTWSPERFALKGPLLCKDDLTFDHRVEAFLRVYLEKLSIRAQRSWETRYQNMFAKYAIKAVADSSFTQVETIPSGVNELPWIQTGSAGQALNQSTSELTQEMLDVAAATLIRNGATNPDSSGFISYSSDGPVFPLYIGLEASQRIAQNNPAFRDDLRYADQGTGAGAELLKRIGANRVIKNFRHVPNLFPPRYSYAGGKYTLVQPFTSSSGTKGTVFSVNPSWTTAAYEAAFIVTPYVFKSHIVRPVNRVGDLAWMPTNYMGEWQWVTGAYKLDTDCPDPLDKKGQHYAEFIHAPEPIFTNQGMTIIFRRCTGALTQIICS*
Ga0151515_110889	F000922	N/A	MAKPSEVWDTVKARYLSGEELSAIADDLKLCVETVQTKASRTGLTKLRKQMQTVCKENKSQSLESLSALVRSKLAADAASTLERIDSYDLADLKDESTREQILGSVAKRSALVFGWSEGGESTSVSINLLGSMPDKLFHVEQSVNPV*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0151515_11088

Overview

Ecosystem & Geography

Associated Families

Sequences