Scaffold Ga0151515_11084

Overview

Basic Information

• Taxon OID: 3300011114
• Scaffold ID: Ga0151515_11084
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 10184
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (78.95%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028165	Metagenome / Metatranscriptome	192	N
F043939	Metagenome	155	N
F053298	Metagenome / Metatranscriptome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151515_1108413	F043939	AGTAG	MATPATDAGQAIAFLRHLFKPYSDGFIELRPLSKVKPHANRTTYRLPHCLKGEEGQALTQHIISLAIRGYDVYVGVCPRAAPEGPGRKLGKDSIEHVGALWLDLDSKVPGSSQGLLDTCDIVVSTGNGWHGYKVAPTPMRVTSPKERTAVEAKVRSFANSILPGTDNVANVDRILRVAGTINWKDPDNPKPVQLLKGGGMKPTYKESLIVEEFGDARLDALLASAKAGELGHASPMIRHASGRYTGCLDTFFLELEQACVKSKLDARWTFLLAIVRADLPEIMRHYFG*
Ga0151515_1108419	F028165	GAGG	MALAFSLEEKKERIRQAMEIFSETGSWSNADSIVRRQSVEKWIRNPELHAYALSLGYQQLCTAPIATFAPETKHPQCRMSFSGAMVHLKEGRYLCRDGARLHYAISHGQLVMYKLDGAGNRHHAGPAYFRGADIMAADW
Ga0151515_110848	F053298	N/A	MAEWKDQQEQSRQARDRAYALEAHRAAYLSRNRAIRDSIRAGVICGVSVLLLLAMVAAAKDALRYELETKPAILKAQGVK*