Scaffold Ga0151515_11038

Overview

Basic Information

• Taxon OID: 3300011114
• Scaffold ID: Ga0151515_11038
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 10490
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (87.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010016	Metagenome	309	Y
F012016	Metagenome	284	Y
F029418	Metagenome	188	Y
F034908	Metagenome	173	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151515_1103814	F029418	GAG	MMTQHQVNEEKKRKFEEDLIEVAVAEYYQWVEVHQATRSEWNARMFYDAMRLGVVRGINFATNQYMQSLKNFEEGKKDGTTD*
Ga0151515_1103817	F034908	GGA	MTKFSVVVEVSMDDTYLKQVGTWGVEPSDHIATIIAEPMREKGLVVKCSVLESTHSLYDRQKKHAEHLVQADAYNDLEDEIIGRACVGGRCED*
Ga0151515_1103823	F012016	AGG	MQTTLKQPFAWAIEEFNSDGDLVWSSLMQTRPVELSWIRDLPTKKHNIVITPLYKDEANAEKITGIKSYRESTQRLADAYNGL*
Ga0151515_1103831	F010016	GAG	MGMVMKKTAQNDVTGDWLQSKPNNEMFEKNFDLIFRKKKEVLPEYELNKSTGEVQKKED*