Scaffold Ga0151515_11008

Overview

Basic Information

• Taxon OID: 3300011114
• Scaffold ID: Ga0151515_11008
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 10737
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (90.48%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026266	Metagenome	198	Y
F049625	Metagenome	146	Y
F054861	Metagenome	139	Y
F073554	Metagenome / Metatranscriptome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151515_1100814	F054861	AGGA	MNTKLLKHSRELFKSYDVPEHVRRDYRRKWVRSIRNLGDKWLFAKPITRKENTQ*
Ga0151515_1100815	F026266	AGGA	MTIETITFHFIGQLEDSGAIVDVQCQIDSDGDCRDLDSVMYQGLDVLQVISHSQWSDLEWQGSKAYKHEHNEQQTIAHDLESPLKAIYGLLKPSFYIR*
Ga0151515_1100816	F049625	GGTGG	MLSDIDLKDWIEQPSIPLYDVPRETPIKTPMGMLWFKHIDGMYSLSYDANGHPVHMKAWVKVNPFKRKNDE*
Ga0151515_1100819	F073554	AGGA	MSIELFDDDVDMDLVQYECWYWSVIDSMAELVMNNGRDKVMSHVAEAVLTKAHNGHVAAQEDPFAW*