NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0151515_10971

Scaffold Ga0151515_10971


Overview

Basic Information
Taxon OID3300011114 Open in IMG/M
Scaffold IDGa0151515_10971 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)11106
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (66.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameGangwon-do, South Korea
CoordinatesLat. (o)37.947421Long. (o)127.818872Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003378Metagenome / Metatranscriptome490Y
F006986Metagenome360Y
F041650Metagenome159N
F077020Metagenome117N
F078386Metagenome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0151515_109711F078386GGAMRILTAIMATITAIATSLGIAYAAQAPAPPAWQYSSPQPISADRLEPPAETIVYAHGDCSWVPAMALKAGWTSDQIPQLIQIILRESGCCPNRAGGDIVDEDCNITGHDGSTHSSDTSLLQINGLNYNPKRNPFAPICLQMKICTQEPLFDPLTNLKAGRLLYDYWEKAAGDGWIPWNICNKTSTCKASTKVRP*
Ga0151515_1097110F041650GAGGMREDIQLSFVECQMPRTPYQLERFVVGQHDTPEMQFVQVCREIEALYYTIKEVGMSNKKTELEIAKLRATGDEIDAIDADIKELGLERTRLVAIGARRELDCLIEIYDSMPHFTRQQIDESQPDYWQARLSRQANLQAMAGGAGWAHLEALDQIGVLQPMIQAQQDRAKELQK*
Ga0151515_1097113F077020GAGGMAQTMKWGQAYSVLIDIGEVANGFVLDTDKLDNTVNVLDGTTNFVDATEYVLAVSIKRGRGSQIDNMQVGVCQVQFDDRQSGRLFDPANTASSWYAGTYGLAPRRNFKVFAGTAEMFVGKMTDIDLQYNMPNQSFCSIVAADGLYELARTTLLGFTPSSELTSSRVSTILDRAEVAYSTALRNIETGVATCGTVSYADNDNVLTALQNVAVAEDGRLYANRKNEISFDARIFSTFSTAVANFGGTAGTSIPVQEISVAYGQETLFNRVSIGVDGFGTAQVVSDAASQTQYGVQSFSYDNLPLVSLAAGSALAVNLLARYKDPKFRFDSISTSLNACGSAQFATLTTLDVGDVVSVTKTYSTGLPLSRTDNMYIESISHDITPQDHRIRLGLGQANVITNFILDTSTLDSTAFGLG*
Ga0151515_109712F006986N/AMSAVLVIWHDAHSGSESWVNIKDLDKDPAIVETVGFILPTADGGKPGHITLFQSRTEDALDHVLHIPHGMIQRIVAIPTPTD*
Ga0151515_109716F003378AGGAGMEPTVKIKQNSTIAKFLDLGQRLLSLFLANALPAITTGAVIGISVSKSAIMAGAMAVIKVVSALAEASVDGELTTEEIKEAFSGAKKK*

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