Scaffold Ga0151515_10930

Overview

Basic Information

• Taxon OID: 3300011114
• Scaffold ID: Ga0151515_10930
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 11440
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (79.31%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029722	Metagenome / Metatranscriptome	187	Y
F033407	Metagenome / Metatranscriptome	177	N
F077243	Metagenome / Metatranscriptome	117	N
F082574	Metagenome / Metatranscriptome	113	N
F097190	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151515_1093014	F082574	GGA	MTDKEKSYALLRKLADETTYVMVHPNELRVLLDDLDHMRLRVRIAREELSDAWQLYRGDMA*
Ga0151515_1093024	F033407	N/A	MNLNTFEEGLLDSIQTERCKKLLWSVIQLAVDDACKAPYKTRPTDETITALRFLFGDLYESGLDNYLMWLDVDSKEFKRRMVNAMFSERHDKFTDFERRAFRANYNWYLRNEINTND*
Ga0151515_1093029	F029722	GGAG	VASWINLIKQVKSSDIEEITAAYEKALPFVVQDWAKMILKLAKSKRLPIIEKIDRIHGQKIGQMVRDEVTAQHLSLSQKTSSQQSPTYRSK*
Ga0151515_109307	F077243	GAGG	MNLHEAAAMSAAQDVIEQAQTTSALEQRALAIVNLSIELHKKAIDLRLQAEEILKEIRFQ
Ga0151515_109308	F097190	N/A	MTMTDEQKKILAYLKKRKTPADLKSVRLQTKIDKQTTVNCLNALLKKGCIKTSFRIDPFTKERVWEWVKDEYEAKKVSRPKKKFKPVLAKQEEGVDISFFNNPFNLRVA*