Scaffold Ga0151515_10862

Overview

Basic Information

• Taxon OID: 3300011114
• Scaffold ID: Ga0151515_10862
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 12246
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (7.69%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Varidnaviria → Bamfordvirae → Preplasmiviricota → Maveriviricetes → Priklausovirales → Lavidaviridae → unclassified Lavidaviridae → Yellowstone Lake virophage 5 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042796	Metagenome	157	Y
F064499	Metagenome	128	Y
F073261	Metagenome / Metatranscriptome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151515_1086211	F042796	N/A	MDEKGFVEVMPAEKKPKDPRMEKIDAQFLPELPATILILGQCGSGKSSALWSMMTKGYVTGKTKKKSIFDEALIYIGTLDAKASFEKMPIENKLIMTEFEPVSFDEYQTDLKKHQLERLEKGKPMMNTAIIFDDFAGASLMRKAKVGGAPPIEKLCLTSRHESNCTLFYLTQFYKNTGFTSPAVRANITTIILYKMPVNEVRKIAEEYAEQYDVDEFIGHYDRAMARRPYNFLVWDRRRPMNADRWTEGFTTPLPPSKKLTEMHKLMGRRASVSVSEGESESDKEPN*
Ga0151515_108625	F073261	N/A	MEAVLNNPKTSFLQNPKTFSEIQSQSGMSMSAMMKHIGGKMRKQKQKGPTDDEKAKERLDAMDSANKK*
Ga0151515_108629	F064499	N/A	MPTEAHVINVKERTDRWEAFQSAWKDQPITPIRRDAIKPDGVEVLDVYHAVFLKHREILTTAQKLGEKYVLIMEDDAVPGKNFARHWESIKCCLHQMDDWDLFNGGMLMIRDCVEKVIRLDYPDGKDPTMLLGVWRGAMAHMVYFKVDSALKKMEDWEAEGKPMFDGWYSHKLNTMACIPYLAQQSDGFSDSAGEHREWSQRFQYEEDMMKHALRDFMQAENVVPNLKHDDPRQTILRERDRTIGVDAPVHEKCDHETCRFPTSSCPAS*