Scaffold Ga0151515_10798

Overview

Basic Information

• Taxon OID: 3300011114
• Scaffold ID: Ga0151515_10798
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 13049
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (68.42%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002009	Metagenome / Metatranscriptome	604	Y
F002149	Metagenome / Metatranscriptome	589	Y
F003304	Metagenome	494	N
F020665	Metagenome / Metatranscriptome	222	Y
F021063	Metagenome / Metatranscriptome	220	N
F025460	Metagenome	201	N
F030376	Metagenome / Metatranscriptome	185	N
F041081	Metagenome	160	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151515_1079814	F002009	AGGAG	MTAPTIQEMGNAAQEIVWRVMGKGSDKSEYGDWLIKDRPTHDYHIARAIRHLATAQMQLHKSTPCPDNNGETSIDHLERALVRSLFVLAQIKKEVPRL*
Ga0151515_1079815	F041081	GAGG	MIMEDVSVDFEFNGEKYTAYGNAEIDTITEDIGPVGYMEHCFAKVVNNVTMSKIEISTATEDIKNPSKELLEKADDLLSIQATEDFDSRQ*
Ga0151515_1079817	F003304	GGA	MEGRKMKQALVTQSFGDEWRKIIDLTRPRMEAYCKRHSVDFILIDKPLTHPAQYSKSAIGNIMATKGYEQVTFVDADVLIANDCPKLSEDAGVFCAFDEGAYLDRKPDMVKLAGAFGGIIEPKFYVNTGVFVVHTKAVGVLSMPPIGLHPNHFAEQTWLNVMAHLWNIPLTELDPSFNCMTSVESHFGLDRYKDAMIIHYAGQSNDLVKLANQIQADEAKLVELGR*
Ga0151515_1079818	F021063	GGAG	LQQLAGEVALQAIRDLRMLRKRGMVKGMKIIKDHQGVPLNDALEYKNSHEVQKLLRDFKTGVVSWWCRASGVQIDNRTLLRKLKENDYVLPT*
Ga0151515_1079819	F020665	AGGA	MKKRKTGRSIKLVKVEDYDAVKILVDVDDDLFNAMADAGRQHIVKDKVACFEYALNKALLEMIEEIK
Ga0151515_107982	F002149	GAGG	MTAVEYIEKSNVPEAMWPNLADWFGWFEKQGMVGIVEDKDGIAGVALARCVKDGQKPDHYVHSEDGENVFVDLTISSKGAKSLRCLLLLLWQRFGPRKRITFNRSGKPRSYDYMTFMRKARV*
Ga0151515_107985	F025460	AGGAG	MAVLDIPAMMDMFRQDELQKQAVAEAQRKQALEERTMALKEQPDVDFSFEKGGLKVKGKLKDLPALSQDPAFAPYLAGIGNTITNEQSLENEEIQSQRDAINERLRKLSTERLKQELEIAKGDTRTGAMELGLGLVGLKKRSDVMKELEAERGVLQGRIAELGFNRQTGQMETETPEGAPAATEPSAPAIAAPATEQQPAQPQTPKNFNSLQEARAAGVKPGELIYINGKPGRLQARQ*
Ga0151515_107988	F030376	GAG	MKAITMIILTAMLMASVMAEDEDGDAADFVGAVLKRNGFSCGRGCVISEDGGMAYSSSSGRSIISTEGFYFKSGSSVVGKDSTFISKSRNFFYGTSTTIKAGSAYMNEGAVWVGSQEEDND*