Scaffold Ga0151515_10787

Overview

Basic Information

• Taxon OID: 3300011114
• Scaffold ID: Ga0151515_10787
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 13173
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetes bacterium TMED75 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004664	Metagenome / Metatranscriptome	428	N
F005740	Metagenome / Metatranscriptome	391	N
F007361	Metagenome / Metatranscriptome	352	N
F012111	Metagenome	283	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151515_107872	F004664	AGGAG	MSGYKVLNEHMVIPGGWSYRVPETGIEIAGGSWPQLHEFIRNHYTANAIKIPANLDTLITEYACRNGADCSYDEVNIPKPAGLKSLQLGDVIRFSMSLLHGLTVGGGKVGQAEANRRANICSTCSFNRKPLGCTGCNARVLKDAVKTFSQHGSTPVDESLQSCEFCGCFIRSMVWFPIETLHKFSDATENENLPAHCWKKRSCTET*
Ga0151515_107875	F012111	AGG	MSERAPRRYTDGSVTFEGGIDAGVMPSEVDKNQVAFAVNSSFRQGFISPRPGFVQKDFGICVTITADNDQITADQINVTADGWSEECYGPTSINGVFQCAIPYISDNGRTFILMLVGGQVWLYDTEQNQAQSLSTSDALKNPDNILDGWMVQAENFVVIQDGFSTPLIFNGSSLRRAADDEIKCGRVMAYVNGRIWYSLPDGFSFRAGDIVYGDGTRASVLKETENTFLNEGGDFAVPSDSGGITAMAVPGNPDTSLGQGPLLVFTPRYIFSINAPVDRDVWKNLNYPIQAISLLTSGALGARSTITINGDVFYRAVDGIRSFIIARRSFNDWGNTPISNEILNIVENDQVNLLWSSSAVVFDNRVLMTSQPRYDALGVTHKALAVLDFDLITSMRKKFPPAWAGIWTGLNVMQILKTESVYGDQCFSIVRGSDNSLQIWEITKSEKFDYNLADGKKEIQWLVQTRAYNFEIPFGLKRLDSGDIFIDSLDGDVSFNVEYRPDQYPGWLEWADWSECATTNQCLDLCPITNFQPQYRPKMRLPTPSDVPCNSSISTPTRNMYEVQMSLTVTGYCRIKSIRVHAYDVQEPSVGECLVFEGCKTLEACDVNPFFYTSEPQNNLA*
Ga0151515_107877	F005740	GAG	MKLIVQDIRSTIARVIGTCVDDQRVYDYINQACRRLLHKGLWAGAYGRFTIHTVGGCITWPRQIETIESVADCCGVGTVRNQWFEFQESGYGLLGENNGGCVGKQLVDRGTVVSYRDVSGGLNNYLRVYPGDISDVGKTITLQGVDQNGNWIRTQSGGVWIDGEKLTLALPYVQSTKKFIELTGVIRQATNTASRLYEYNATTLLELDLAVYDPDETLPQYRRSYLTDRCNNDEDKPVTVMAKMRHINATSANDYLIPPSPDAIKLMVMAIRKEENDLIQEAVAYEAKAVQAVQEQTMQYLGDAVATIRMVGVGLNGGGFSQWF*
Ga0151515_107879	F007361	N/A	MNGKLFQICGLPRFGSAFMSVLFSLETDCIGLHEQGATDPDWKKSIEKYRMRYKYVADCSTYGYLPKAVVHDSIKVYVKKDVESSAKECTERFGYEVHLPSVQMLREYADQWASLHGVMTIKEGELFKVDTLRDVWVHCFHNERAFPEEKATRLITMNIQRHEPEKVFSIENGNRLAKEVF*