Scaffold Ga0151515_10776

Overview

Basic Information

• Taxon OID: 3300011114
• Scaffold ID: Ga0151515_10776
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 13345
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 34 (94.44%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004231	Metagenome	447	Y
F014489	Metagenome	262	N
F019121	Metagenome	231	Y
F029673	Metagenome	187	N
F032957	Metagenome	178	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151515_1077617	F014489	AGGAG	MEMKQQHYAILKRLQYGASSLKRFTDKDTEVGNQGFHYLRYLNDLQNFGYALEIGDVWHITGFGVAKLAEQTPRVSKDRVAAGTTTELYDGADLKQSGIREGAFDFLQYPSKFGDNLVFPRNQGATA*
Ga0151515_1077619	F004231	AGGAG	MSVTPKNFQHEICVYLEGVGECLVCFDILTPDIELDADHADDYEIDFAVFDEQDKHITYDIDRKQYNHCENKAMDEMLDITTQWHKEWESV*
Ga0151515_1077621	F029673	GGA	MTKAEMITHLRMAACNENTITSMSNAFDLGAEHERDVVASIIFNMVKDQRLAQNIVDTIRVRE*
Ga0151515_1077625	F032957	AGGAG	MDDELMGTTRLFPRTIETAFPKEYVNEGIFEGPYYSAPHINDVSVLFALIAVVGMVAFALWRYF*
Ga0151515_107764	F019121	AGG	MSFTLKKSINGLSIDDIKKIYDNNPNMTLRELSNLSGYAIPFLKKILLED*