NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0151515_10765

Scaffold Ga0151515_10765


Overview

Basic Information
Taxon OID3300011114 Open in IMG/M
Scaffold IDGa0151515_10765 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)13414
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (66.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameGangwon-do, South Korea
CoordinatesLat. (o)37.947421Long. (o)127.818872Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002149Metagenome / Metatranscriptome589Y
F003304Metagenome494N
F011281Metagenome / Metatranscriptome292Y
F033721Metagenome / Metatranscriptome176Y

Sequences

Protein IDFamilyRBSSequence
Ga0151515_1076515F033721GAGGMRWIKKELDEDGKPEWAVYIDEVGDGNEDDWSHYDTYPTRQEAIDDCKHITWEDYDCNDK
Ga0151515_1076517F003304GGAMEGRKMKQALVTQSFGEDWKKIIDLTKPRMEAYCKRHSVDFILIDKPLTHPAQYSKSAIGNIMATKGYEQVTFVDADVLIANDCPNLGEDAGVFCAFDEGAYLDRKPDMVKLAGAFGGVIEPKFYVNTGVFVVHTKAVGVLSMPPIGLHPNHFAEQTWLNVMAHLWNIPLTELDPSFNCMTSVESHFGLDRYKDAMIIHYAGQSNDLVKLANQIQADEAKLVELGR*
Ga0151515_107652F002149GAGGMTAVEYIEQSSVPEAMWPNLADWFGWFEKQGMVGIVRDEDGIAGVALARCIKDGQKPDHYVHSEYGENVFVDLTISSKGGKSLRCLLLLLWQRFGPRKRITFNRAGKPKDYDYMTFMRKALL*
Ga0151515_1076521F011281GAGGMSEFKQKVLTAAVDRYVLTKTQCEMLRQDAEVIGMKRATVMKKDGTTRKSFARSCSSCWIPYAKHNNWIYNIMRELTDAINAEHWRFDVTGMQQLQ
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