Scaffold Ga0151515_10730

Overview

Basic Information

• Taxon OID: 3300011114
• Scaffold ID: Ga0151515_10730
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 13763
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (2.94%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000716	Metagenome / Metatranscriptome	923	Y
F024031	Metagenome / Metatranscriptome	207	N
F050906	Metagenome / Metatranscriptome	144	N
F052406	Metagenome	142	Y
F053077	Metagenome / Metatranscriptome	141	Y
F053753	Metagenome / Metatranscriptome	140	Y
F076869	Metagenome / Metatranscriptome	117	N
F098653	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151515_1073010	F024031	N/A	MTPFKTLRGRRILIEVPVKKESVITLSEKDQDALMYEAMKQWNRLTVYAIGDKVEEIAVGDSVYIPTGQLEHAEKVDIDGSVKLMFNEMDIAIIW*
Ga0151515_1073016	F052406	N/A	MKRVDIFSFLASDATELMKMQTKLNQWLTAKSLVKYEIHTAGEYIIFNVCRKKEQE*
Ga0151515_1073021	F076869	N/A	MITLFMITEVTKLVASAQKNNITFSQEYIDALYMLDIQDIVMLKESYSAEKLVSA*
Ga0151515_1073025	F053753	N/A	MNHQLKYGYSQLGTNILVKINCKMSNQQAIELEKKFPEICIWQTRNGYRIEGAFNTKQNNVYVYDKFEDFKLSLALNLNDFKINKLIDKNQALLKQGNLRLNVVDLDII*
Ga0151515_1073028	F098653	N/A	MCNTITSVLGFDLDAEITDNEGNVIPSGTTCNYIPEEKPDYVFNIDYYNKWTNFNEGLLNKIRDYKKYN*
Ga0151515_1073029	F053077	N/A	MLYQLPNGKVIHLTVDQYLELTDLDIQHLIALDAGDHMVNPFSESAVNINTKEKYYDFDYVSLDDDEVQNYKSDDQPFDDIIDLSGPLDN*
Ga0151515_1073031	F000716	N/A	MEKFKQDLQNYQINSKTYVKYDTDGLNQYQNYLYKRALYGLSSLTEKELETMCSKKKQRIINVYKKAQIVLNKLKQDITISYSNFIFKTLFPNSPITEYLLSDTETDTSFKNTLTFKDLNINKDKIITIFMSEGILPKNFLSLELPQNQLPRLKSK*
Ga0151515_107308	F050906	N/A	MNYILMLLILSIACLLWIIGNFFKSPVYNKIKDAYEIDHQSDIIGSYFIVASLLLIFFAGSFL*