Scaffold Ga0151515

Basic Information
Taxon OID	3300011114 Open in IMG/M
Scaffold ID	Ga0151515_10656 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011114 Open in IMG/M

Scaffold ID

Ga0151515_10656 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	14598
Total Scaffold Genes	23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	15 (65.22%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

14598

Total Scaffold Genes

23 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

15 (65.22%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.947421	Long. (^o)	127.818872	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.947421

Long. (^o)

127.818872

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002009	Metagenome / Metatranscriptome	604	Y
F003304	Metagenome	494	N
F007467	Metagenome / Metatranscriptome	350	Y
F027775	Metagenome / Metatranscriptome	193	Y
F074558	Metagenome / Metatranscriptome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151515_1065613	F002009	AGG	MTAPTIAEMGDEAAAITWRVMGKGSDKSCYGDWLEKDRPTHDYHIARAIRHLATAQMQLHKSTPCPDNNGETSVDHLERALVRSLFVLAQIKKEVSRL*
Ga0151515_1065615	F003304	AGGA	MKKALVTQAFGDDWKKILDLTKPRMEAYCQRHKIDFIALEKPLVEPVQYTKSAIGNIMATKGYDQVIFVDCDVLVTKDCPDIGEDAGVFCAFDEGAFLDRKLAMGQLAGAFGAVIVPQFYVNTGVFVISSKAVGALSMPPLGLLPNHFAEQTWMNIMVHIWGIQLTNLDPVYNCMTSVEEHFGLDRYKDAMCIHYAGQSNDMVRLAELIKSDDAKLVELGR*
Ga0151515_106562	F027775	AGG	MGSSPSAASAPPPPDPKEVAQANAAAYRMNVDTYIEKAPEMAALENKLRIQYMPQQRSLERQLSALDQQSAVLAGLQNERQYGPQRTTEALRRSYEQSPQAYALNRGLGDQMTRQFERLYGASPYGSVEQNVATNRQPGPVDFYGTLGTNISNPELKA*
Ga0151515_106564	F074558	N/A	MPDTFGDKDALRKAAMAEELQRGQLEKNRYDLAKAREEQEMSSPSGRSTKAAEIAATLEQDKQRQFGTPIQEGMAQRMTSAGGPSILDATRMQAELDVSAKAGEARRAALMNFAAGEKSLLPTTTVEMGGARQNVLSTEAGAAGADMYGQIYKNQVPRLADTYIAEGYDRDTAVRMASADIRKELVKASTGGKIILPVGEGLNSGTISYSNEEAERKWRDPQTPKAIKTQLNSIFGQQEEPKAASWIKTRLGR*
Ga0151515_106569	F007467	N/A	MTDLEAWNKFEDGLKDVTSMEEAVAWVKKNQPIVEKLTIRAMIRKFNDDISKANKSWRN*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0151515_10656

Overview

Ecosystem & Geography

Associated Families

Sequences