Scaffold Ga0151515_10641

Overview

Basic Information

• Taxon OID: 3300011114
• Scaffold ID: Ga0151515_10641
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 14743
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (68.18%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001805	Metagenome / Metatranscriptome	631	Y
F008616	Metagenome / Metatranscriptome	330	Y
F008811	Metagenome / Metatranscriptome	327	N
F011755	Metagenome	287	Y
F013987	Metagenome	266	Y
F023328	Metagenome	210	N
F030061	Metagenome	186	N
F058943	Metagenome / Metatranscriptome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151515_1064110	F001805	GGA	MIKKNEAIFIGIDDQVIELTGADKEAFIAQREADNAEAALLETEYKAKQKAREDAIKKFAEVAGLTEAELNAIL*
Ga0151515_1064112	F023328	N/A	MTVYTPTYRVTIAGVVQTSTVLQDGTITYGRNDFFEATQPSYCNIELLNLDGTSPVVELLDTVLIEVTDSTGAYVKLFTGEVSGIYNRFEGAGLGGKPNTLQIQAIGALGLLVKRYAGAVAYPEELDGARIQRILEETLFVAWEDLSNTLTWNDFTTETWDNYGVQGIDTIDAGRYEVLARSAEVQQAYELTDITQQSGLGYLYDTPEFEIGYADAERRSANYATNLIELDANLVNADIQTRLQTADIVNSVVIRYDDPILEVAAQNDTSINNYGLLEEIRSTILAQTVDATEQATNFVNYRGTPRTSLEAVSVNLAHSDMTNTVRDNLLGVSMDSLLYLDNIPVGLIPEGYFEGFIEGWTFTLGRKNLELTMSVSNSIYSTLDVQWEDYNALLQWQNLDSTTTWLDVI*
Ga0151515_1064115	F008616	AGG	MLKLKLTWELETGEKFEEWTRPIELSLAEKELYSGKSIVKILIEESTPSNTLLLFLAHKIQQRVTKKVENFETWKSKVTDIAASDFETANFTKPEVSGEQQ*
Ga0151515_1064116	F008811	AGG	MATTILSGRSLTLTIATKNYSEQILDSAINFDTERLTFDTLAGKAYKYIDSNVTLDINFLNDAGKSPDSLYKALWDATESAPDTALAFVLTLTTGVTLTGTVLPQYPPVSASGADAQTCSVSLQVVGIPTEDLTA*
Ga0151515_1064117	F030061	AGTAGG	MALSTLRAGLKTAITSNTNYSAYDHVPEIIIPPAALILASDPYLEPVVIGNNKNWYVRLTLEVVSTTYSNPSALTNLEDDIETILGLIPTSWIILSVSSPRIRSTNSTDLLSAEIQLQTAYTG*
Ga0151515_1064118	F058943	GAGG	MPVLVTAAQLRAVLGVPNTLYDDTALNAIINTAEDAIGDFLIQWKVGIDKHYSATATETTIHTTRPHKFYDGQTVALSGVEAHVNGNKTISEIVDPYTFRITTTGAPIHTEYYNVIPNGIAAENDLSQYDGVAAIEEAVLQIAIDVFQSRLAAGGTQQALDFTPAPYRMGRTLLYKITGLISKYIDSNSQVG*
Ga0151515_106412	F011755	N/A	VNRKNGKQMSDVIYLHYHYDYDNGIQSTCRDAKCYQKRLEDRKKLEEYQFQVDCDLARKENLRIVEDMIQDPRIDNYNDY*
Ga0151515_1064122	F013987	AGGAG	MIKEEKHRILPALDRAHEEALRQGIITTLDAAGMAMAYTLAGVLDGGTLKPVEEVKYMGQLQQILDKYGLSLYGRKEKPELETGEDPIDNLRKLNPENSDHTTSSPN*