Scaffold Ga0151515_10631

Overview

Basic Information

• Taxon OID: 3300011114
• Scaffold ID: Ga0151515_10631
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 14901
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (73.08%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Associated Families: 11

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010236	Metagenome / Metatranscriptome	306	Y
F015467	Metagenome	254	Y
F023588	Metagenome	209	N
F024783	Metagenome	204	Y
F031492	Metagenome	182	Y
F032578	Metagenome	179	N
F035297	Metagenome	172	N
F047047	Metagenome	150	N
F048305	Metagenome	148	N
F049615	Metagenome / Metatranscriptome	146	N
F057369	Metagenome	136	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151515_1063111	F023588	N/A	VSQPMVLVTWADAHSGVSTWTPIGELDKDEMIVSTCGFLLATCDGGKPDHITIYQSRTQEDDIDHVLHIPCAMVRHIAICSPDQLG*
Ga0151515_1063112	F015467	GGAG	MRRITATIVTTLTMLIGIGTAHAVQAPKPIHNPSVNRIEVIPKERRLNIVFQHGDISWLPQLAAEAGWPPKTWRRLGQIILRESGGCPNRRGGDIVNGDCEITGIAERTHRSDSGLLQINGVNYDLSRNKWAAVCLAKIACTQEPLLDAITNLRAGLALWKVSGFDPWTVPEGGW*
Ga0151515_1063113	F035297	AGGAGG	MEPMTDRNKAGWIIAFTLIGWVFFILPTSGGDFDPPTPISNLAWINWGIINVIALIWVHLLISREARAEKRGRKTLRRVAKARQMHPTNRSYE*
Ga0151515_1063117	F032578	GAG	MSVATIHTFEGRAFDQSKEDIQALEYIRTQIQSLNHKLRNEYSQLLIDAQSAGKNLNLHAVKSHRRYEVARGIILLMQDGQFDRDLVKGICSHITKETYPKAGEALGHLNAAQAELFAQICYGITVDQVTIQYIPEQNSFRVQEVRQ*
Ga0151515_1063120	F049615	AGGAG	MTPDTVNLIAELEQRVSDLSNALELVTEDRDNLRDAGNSLMAELEACRITLTQAHSDISRLRIFLAQGAEL*
Ga0151515_1063122	F048305	N/A	MGMSDYDIDIKDKDFRIAELIHETAQEQLIAQKLRVEVLELCNEIARLNSHIQTLETTLAAMSGELHALRMDTQ*
Ga0151515_1063123	F031492	GGA	MRQFNIGDKVILDDESGVIESVVMTDGKETRYDVRYGHTFMIATDVPEEDIQPWQADEQ*
Ga0151515_1063124	F057369	GAGG	MMIDDPVAEFIEAAANGLCTAYVVVATVERIDGSQSFWITTLNRQTSSTTLGLLVSATSAEQYRIAKSLTEGNI*
Ga0151515_1063125	F047047	AGGAGG	MATKPKQHRYPAINLLATFTAGTNDQEMADMLGISRSCVVRWRTGFHTIREYEADRYAIHLGFHPAEIWDNWLDDAMSV*
Ga0151515_106317	F010236	AGAAG	MKKFQDVAGRIVAVFLSSALAIVGGSAVIAPELEIWKSAVLAGFAAVATVVQKLAQASLDGNLSMDEINEAFGAKKK*
Ga0151515_106319	F024783	N/A	MDWGIVLAALITAVGGVMTTLMLVMRNENTQDHAKVVDALDTLSGNVDKIGTKLDSHIDWHLKGTTNGETVTRNKVAKSKRNLKA*