NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0151515_10622

Scaffold Ga0151515_10622


Overview

Basic Information
Taxon OID3300011114 Open in IMG/M
Scaffold IDGa0151515_10622 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)15024
Total Scaffold Genes29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (20.69%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameGangwon-do, South Korea
CoordinatesLat. (o)37.947421Long. (o)127.818872Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010620Metagenome301Y
F013186Metagenome / Metatranscriptome273N
F019139Metagenome / Metatranscriptome231Y
F037224Metagenome168Y
F072337Metagenome / Metatranscriptome121N

Sequences

Protein IDFamilyRBSSequence
Ga0151515_106222F037224N/AMQVVQAYIHHKTGKRVEIVFNNPMRMQQHLMMLDHAYLVAMSGFKNNNSNGDNIGKEK*
Ga0151515_1062220F072337AGTAGMKKYRVWLEDSVEPNGGFWWNCYLGDDGKLYDYIYTDQQADTLEWFIKHDYIIEEL*
Ga0151515_1062228F010620N/AMRYILPIIALCLLGSCSNAKKAQYHYKKAVKFGLQLVQDSDTIRIISVDSIPVVVNDTIIWEKVIRTKDTIINFKNIYVPKTRWQTRIEYRYKTQLVKQDVLKYKYIYKTEKKQKTKTNWMLFVYGLIAGFVVSFVLRILDKLYNPFK*
Ga0151515_106225F019139N/AMKTKTEHLGKYITTYNGNFETSFTVTEETAKEHKYYTSIGLGYLFEESTPKVKYKGVENEKAD*
Ga0151515_106226F013186N/AMKKLLDCYISRAYPEVRAYTAYFLSKMGLYIDADTVINNSYIHVLTINDYVADEDKVKSYLLNTIKYQILWSTSKSHKDDRITAIIDNSGDRIEDDELADKIREDKIYSFNKGLIEIYRTEITDQVQKIVFEAFIDKGYTTSRALATYFDITHTSAYYLIKDLKQNLNKLQYRYETESVY
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