Scaffold Ga0151515_10621

Overview

Basic Information

• Taxon OID: 3300011114
• Scaffold ID: Ga0151515_10621
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 15028
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (56.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005562	Metagenome / Metatranscriptome	396	Y
F035760	Metagenome / Metatranscriptome	171	N
F071244	Metagenome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151515_1062113	F005562	AGG	MTKPNIQIDNEVREMTDEEYAELLASGWREEADETPSPD*
Ga0151515_1062115	F035760	N/A	MKYTGYDKTADQRMKGTERFVELCGRRWGMKNLGTLVVRQMRNGQGMSVHATGRAADIGFKDTPEGHADAVEAMLWFVKYYKELGIEEVHDYGGLINGTWQGWRCNRNGKPGWKKWTDTDNGGSKNGRWIHVELAPKSNGGHAEDDVALEAAWRALPKPAK*
Ga0151515_106216	F071244	N/A	MSKYIIVSELVGTPGEDFVPDEGINVEALLDGGFIKSDNKAPKSAKTEPTEENQ*