Scaffold Ga0151515

Basic Information
Taxon OID	3300011114 Open in IMG/M
Scaffold ID	Ga0151515_10603 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011114 Open in IMG/M

Scaffold ID

Ga0151515_10603 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	15251
Total Scaffold Genes	23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (56.52%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

15251

Total Scaffold Genes

23 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

13 (56.52%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.947421	Long. (^o)	127.818872	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.947421

Long. (^o)

127.818872

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000722	Metagenome / Metatranscriptome	922	Y
F008130	Metagenome	338	N
F021771	Metagenome	217	Y
F061855	Metagenome	131	N
F095478	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151515_1060315	F021771	GAGG	MAATPVHAVNITGVQQTLKALNSFDRRYRRQVTIDIKNAGDQIINEARSMVAHFDNSKNNGAPLSGMVRGREKNWKTTAVQAGFKVKVGVRASKERYVNYQRGGIPSGPKGRGTQGTYTEQVAYGSKPYQLMVIQQADAAGAIYDHAGRQTGTSTFVTNLDAEVGPEPRAIDIAVERNKEAVTDKVRQIVETVENLISRDIEAPSGN*
Ga0151515_1060318	F095478	AGGA	MAYVIASPRLGTVGDTYEPADGVNIEALIEGGFIKSTSKTTKSDKPSKDTNEEN*
Ga0151515_1060320	F061855	AGGCGG	MSTYTITSKQLLDNYAVVQTLEPTEIAIGESVTIASVAVPFNGSFQVQNLPQYLYIGINSQGFPMYDTNVPLPNQVMYRCTGDDVERVATSTGTLTYTQTCTWITDTDIADWIGILVSTEEDAAFLVDCAAASNSFIYRRRQESGYNDALGTAPSADVQLGTVMYGGFLYRQRGSVTDFASFDGMVTGGSNGLSPAIKQLIGVNRAQVA*
Ga0151515_106036	F000722	N/A	MTDTPYPDSGISQETRRAMYPDTYSDKYNKVFKQFIDDVLSNKPVAPIDRLENNDILLDELELIYEAHMTIGGQQNRFNASVIRAAINVIKSI*
Ga0151515_106038	F008130	N/A	MVETPAIGDAMADAKTYVYEVYTTRLDTEQMVLIQIFRDPDDGRVLHAQLAFKNASGDSWGTPYQLEKK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0151515_10603

Overview

Ecosystem & Geography

Associated Families

Sequences