Scaffold Ga0151515_10575

Overview

Basic Information

• Taxon OID: 3300011114
• Scaffold ID: Ga0151515_10575
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 15714
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (10.53%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001055	Metagenome / Metatranscriptome	791	Y
F001298	Metagenome / Metatranscriptome	727	Y
F001725	Metagenome / Metatranscriptome	645	Y
F007416	Metagenome / Metatranscriptome	351	Y
F017613	Metagenome / Metatranscriptome	239	Y
F021297	Metagenome / Metatranscriptome	219	Y
F083898	Metagenome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151515_1057510	F001055	N/A	MPGTASIRHIVESTVATYLSTQTGLTTVTFLTGDSAATQTLPKAVVLCESARAPSDLPEGEGNFSCSVRITLFSNADDTTLADHRLRCAALSGNMRDLTSIKAAFTATGDATCYDVTMQSEDEGVDERSWATSFSFDLLAVFPA*
Ga0151515_1057512	F001298	N/A	MSLYADFLADAKEMIADFGVSGSANSGAITFQCLISDPAVMTVLEAGGYCERTQYSVRMPAVTASWTLPDGSNGSSAALLSSGVPIASLGQGKKIVAGGKTVRITTQTYKPASAWITLVVIDDNQ*
Ga0151515_1057513	F017613	N/A	MANSITAAPSVLSAGVLSALVNKLPVLSGISSVFSARPGSTGMAIQVPLIGTSTASAFGSGGYLTSDDATVTAATVTLSHYKISSRFTPSNLKDYGADFFVNNFVQTASIGLAQKVMDTINTQVTNANYSVSTVSGAALSYLELVGVQKTLDDAKAPSPRYAVLNSTYVSDLRQDTTIVGNNVLGASIIRDGDLGIIAGARIYQFANLATNSENLAGWVAGPDAIAFASALPDSEGIPGFEVSNATDAGTGLGVQVLVGMEQSGFLNVTATLLFGAAVGRSTSLVRLKTA*
Ga0151515_1057517	F007416	N/A	MASGLFIGLTECELLDIKAKAVAMITEGKTLMSYSDSGSSASKQFAMPPKEMLGEAMFALSRLDPETYGRRTTVISTSWSTRRD*
Ga0151515_105753	F021297	N/A	MSCTNQVTVSQGNTFACTFTWTPGATGPANLLATTITSTLEDRNFNEYAMTITVAGDGLSFTVVYAGSTASWALGLARWDIKFVFPGSTVSRTEIFRVNVIDSVTV*
Ga0151515_105755	F083898	N/A	MTIQPGNGYSFASSGQGTSLNIDTPWIPPIGDALVFAPQLALNFSSLPEQLVYGQGQGARPSPFECQIVSINGERFLQIAVGAINYTSSLMPEIYYGNESRIMQAYANKVQICPSGMRTNGDLYPIYPDGDPTYSLTWWMEDGGGYKLYDSNSPLTLYAFKWDVAVGVSPFSESSVVNTGLPTLALIADSNSTDQNKIAVDPSPSTYVQTMNVQKMTGYDAASTGLDADWGHGHTSWLNPRKLGYSYKAIAAITAEANTFTMVGAIERVAIPLIQNQVQHISLIGEASGGTALISCGIYTSVVPFPVTTFWDPAVPVYSDELTMAACLNSIPDITVTIDDVPTVVPIAGNVEVSKTSAGSYYVTFCNMLAGINLPQLTFNTAGVTAYDYRFEITQYHTGSIDLITPTQTGMVQLRNVPGEDEADDPYNENETGTWDQIANKDECVACTGFSGDVITGGMLNMTGASAIPVQYDGGEITSEPAPPFTVYRGSESGKWLVQPGTLNDYVPDNMESEITASSGMIYLQISNTDGAYPGDTLTIETAATTPADSDTYGYITLAEITSSTTVNQFVAGSLWSERHKFTEPDTAMYYFYRV*
Ga0151515_105759	F001725	N/A	MAAISNGTSCIYGIANGTFGNLFVQSYSLSSSFNAEAMVVDETGLTKTHRLDDRKSELTVEGIAKTSVVPTLGAALSFTLNTASAYPSGSASVSFTGTITKIDDKGQNKGFTSVSITAIDYEGISPS*